View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7361_low_7 (Length: 238)
Name: NF7361_low_7
Description: NF7361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7361_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37744519 - 37744287
Alignment:
| Q |
1 |
cactgccagttttgtctactatactcaactgcaactgtgcaattatactagaaggagccatgtaagttcaaatgtggcattggaattcgtagtttgagga |
100 |
Q |
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| T |
37744519 |
cactgccagttttgtctactatactcaactgcaactgtgcaattatactagaaggagccatgtaagttcaaatgtggcattggaattcgtagtttgagga |
37744420 |
T |
|
| Q |
101 |
agtttaagaaaatcatagaaaaatgatattttgtgtttccaggtccaggatatgtgtgaagaatctccctaaatatgttgcagaggatcgactaaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37744419 |
agtttaagaaaatcatagaaaaatgatattttgtgtttccaggtccaggatatgcgtgaagaatctccctaaatatgttgcagaggatcgactaaaacaa |
37744320 |
T |
|
| Q |
201 |
gaattttctaggaaaggagaaataactgatgtc |
233 |
Q |
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| T |
37744319 |
gaattttctaggaaaggagaaataactgatgtc |
37744287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37560043 - 37560287
Alignment:
| Q |
1 |
cactgccagttttgtctactatactcaactgcaactgtgcaattatactagaaggagccatgtaagttcaaatgtggcattg----------gaattcgt |
90 |
Q |
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| T |
37560043 |
cactgctagctttgtctactatactcaacggcaactgtgcaaatatacttggaggagacatgtaagtgcaaatgtggcattcattcatgttagaattcgt |
37560142 |
T |
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| Q |
91 |
agttt-gaggaagtttaagaaaatcatagaaaaatgatatttt--gtgtttccaggtccaggatatgtgtgaagaatctccctaaatatgttgcagagga |
187 |
Q |
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| T |
37560143 |
aattttgaggaaatttaacaaaatcatagaaatg-gatattttttgtgtttccaggtcgaggatatgtgtgaagaatctccctaaatatgttacggaaga |
37560241 |
T |
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| Q |
188 |
tcgactaaaacaagaattttctaggaaaggagaaataactgatgtc |
233 |
Q |
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| T |
37560242 |
tcgactgagagcacaattttctcagaaaggagaaataactgatgtc |
37560287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 37765568 - 37765466
Alignment:
| Q |
131 |
ttgtgtttccaggtccaggatatgtgtgaagaatctccctaaatatgttgcagaggatcgactaaaacaagaattttctaggaaaggagaaataactgat |
230 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||| ||||| |||||| |||||| | |||||||||||| ||||||||||||||||||| |
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| T |
37765568 |
ttgtgttttcaggtcgaggatatgtgtgaagaatatccctaaacatgttagggaggatggactaagaaaagaattttctaagaaaggagaaataactgat |
37765469 |
T |
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| Q |
231 |
gtc |
233 |
Q |
| |
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||| |
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| T |
37765468 |
gtc |
37765466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 38600497 - 38600575
Alignment:
| Q |
4 |
tgccagttttgtctactatactcaactgcaactgtgcaattatactag-aaggagccatgtaagttcaaatgtggcatt |
81 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||| |
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| T |
38600497 |
tgccagctttgtctactatactcaactgcaactgtgcaaatatactagaaagaagccatgtaagtgcaaatgtggcatt |
38600575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 38600641 - 38600742
Alignment:
| Q |
132 |
tgtgtttccaggtccaggatatgtgtgaagaatctccctaaatatgttgcagaggatcgactaaaacaagaattttctaggaaaggagaaataactgatg |
231 |
Q |
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|||||||||||||| || ||||||||||||| | ||||||||||| | | ||||||| |||| || | ||||||||| || ||||||||||||||||| |
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| T |
38600641 |
tgtgtttccaggtcgagaatatgtgtgaagagtatccctaaatattatacggaggatcatctaagactaaaattttctaagataggagaaataactgatg |
38600740 |
T |
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| Q |
232 |
tc |
233 |
Q |
| |
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|| |
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|
| T |
38600741 |
tc |
38600742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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