View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7362_high_1 (Length: 707)
Name: NF7362_high_1
Description: NF7362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7362_high_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 14 - 707
Target Start/End: Original strand, 29179821 - 29180512
Alignment:
| Q |
14 |
gacatcaaaacaggaaacggtgcccttcgatatacacccttatgaaaaggcaacaatacataggttctaagtttcatatccatcatttggagttgagaca |
113 |
Q |
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| T |
29179821 |
gacatcaaaacaggaaacggtgcccttcgatatacacccttatgaaaaggcaacaatacataggttctaaggttcatatccatcatttggagttgagaca |
29179920 |
T |
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| Q |
114 |
atagagtaccaagcataattggatgccatagtaaattgaactccaattaaatatctcaaacaccgcaaaagattttattccaaaacaaatttaattttca |
213 |
Q |
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| T |
29179921 |
atagagtaccaagcataattggatgccatagtaaatggaactccaattaaatatctcaaacaccgccaaagattttattccaaaacaaatttaattttca |
29180020 |
T |
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| Q |
214 |
atgtaaatcctagttacttcctatggggttctgcttccccggtaagtcattctccaacaaaaccacccacaacgtaccactatactgaataatgaattca |
313 |
Q |
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| T |
29180021 |
atgtaaatcctagttacttcctatggggttatgcttccccggtaagtcattctccaacaaaaccacccacaacgtaccactatactgaataatgaattca |
29180120 |
T |
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| Q |
314 |
tttttcaaaggcataaccattttcaaaatccatattctttctcaggaaaagttctctatttatgactatcctattcccatatcaatgttgtggttgatgg |
413 |
Q |
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| T |
29180121 |
tttttcaaaggcataaccattttcaaaatccatattctttctcaggaaaagttctctatttatgactatcctattcccatatcaatgttgtgggtgatgg |
29180220 |
T |
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| Q |
414 |
aatgtatattcacactcgtaaaggaagtagatatctcacacagaaggaaacataacaggtgttactgtgaaaatacatacatgaagccccggaattagac |
513 |
Q |
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| T |
29180221 |
aatgtatattcacactcgtaaaggaagtagatatatcacacagaaggaaacataacaggtgttactgtgaaaatacatacatgaagccccagaattagac |
29180320 |
T |
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| Q |
514 |
taatgcaccaattctattttacaacgttnnnnnnnntgttccaaaaacctcactatcgatattccatatatccaccataatattcaaactatcaccagaa |
613 |
Q |
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| T |
29180321 |
taatgcaccaattctattttacaacattaaaaaaaatgttccaaaaacctcactatcgatattcc--atatccaccataatattcaaactatcaccagaa |
29180418 |
T |
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| Q |
614 |
gtaaaatacatgacctaaaattgtaccattcacctaaattacaacccaaatcatttaacaaaactaaagcaaggcatagtaaccctaacatacc |
707 |
Q |
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| T |
29180419 |
gtaaaatacatgacctaaaattgtaccattcacctaaattacaacccaaatcatttaacaaaactaaagcaaggcatagtaacactaacatacc |
29180512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 29177546 - 29177597
Alignment:
| Q |
484 |
aaatacatacatgaagccccggaattagactaatgcaccaattctattttac |
535 |
Q |
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| T |
29177546 |
aaatacttacatgatgccctgaaattagactaatggaccaattctattttac |
29177597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 29175804 - 29175836
Alignment:
| Q |
194 |
caaaacaaatttaattttcaatgtaaatcctag |
226 |
Q |
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| T |
29175804 |
caaaacaaattcaattttcaatgtaaatcctag |
29175836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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