View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7362_high_2 (Length: 469)
Name: NF7362_high_2
Description: NF7362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7362_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 6292109 - 6292558
Alignment:
| Q |
1 |
caaaggcgaaacctctagcatgatgtaccaatttttgaacttcttgcaaacaacaaaagcacctttttggatcaatgcttacccttactttgcatataaa |
100 |
Q |
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| T |
6292109 |
caaaggcgaaatctctagcatgatgtaccaatttttgaacttcttgcaaacaacaaaagcacctttttggatcaatgcttacccttactttgcatataaa |
6292208 |
T |
|
| Q |
101 |
gatgatccagattcaattcctttggactatgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatg |
200 |
Q |
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| T |
6292209 |
gatgatccagattcaattcctttggactatgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatg |
6292308 |
T |
|
| Q |
201 |
ctatggctgatgctgtatcattttccatagctaaaatgggatttaaagggattgaagttagggtatccgagacaggttggccttctagaggcgacccgaa |
300 |
Q |
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| T |
6292309 |
ctatggctgatgctgtatcattttccatagctaaaatgggatttaaagggattgaagttagggtatccgagacgggttggccttctagaggcgacccgaa |
6292408 |
T |
|
| Q |
301 |
tgaggttggtgcttctccgcaaaatgctgcaacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgagg |
400 |
Q |
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| T |
6292409 |
tgaggttggtgcttctccgcaaaatgctgcaacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgagg |
6292508 |
T |
|
| Q |
401 |
ttggaagtttacttgtttgcattgtttaatgaagatttgaaacctggacc |
450 |
Q |
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| T |
6292509 |
ttggaagtttacttgtttgcattgtttaatgaagatttgaaacctggacc |
6292558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 36381823 - 36381911
Alignment:
| Q |
269 |
gagacaggttggccttctagaggcgacccgaatgaggttggtgcttctccgcaaaatgctgcaacttataatagaaacttgttgaagag |
357 |
Q |
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| T |
36381823 |
gagacaggttggccttctaaaggtgatccggatgaggttggagcttcactacagaatgcagaaatttatcatagtaatttgttgaagag |
36381911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 32856688 - 32856285
Alignment:
| Q |
30 |
aatttttgaacttcttgcaaacaacaaaagcacctttttggatcaatgcttacccttactttgcatataaagatgatccagattcaattcctttggacta |
129 |
Q |
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||||||||||||| ||| || ||||||| |||| |||||| |||||||||| ||||| ||||| ||||| |||| || || ||| |||| ||||| |
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| T |
32856688 |
aatttttgaactttttgtcaaaaacaaaatcacccttttgggtcaatgcttatccttattttgcttataagaatgaccctaatcaaatatctttagacta |
32856589 |
T |
|
| Q |
130 |
tgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatgctatggctgatgctgtatcattttccata |
229 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||| | || |
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| T |
32856588 |
tgtattatttaatcctaaccaaggaatggttgatcctaatacaaatttacattatgataacatgctttatgctatggtagatgctgttacatttgcaatt |
32856489 |
T |
|
| Q |
230 |
gctaaaatgggatttaaagggattgaagttagggtatccgagacaggttggccttctagaggcgacccgaatgaggttggtgcttctccgcaaaatgctg |
329 |
Q |
| |
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|||||| | || ||||| ||||| ||||||||||| || ||||| |||||||| || ||| ||| | |||| ||||||| || | ||||||||| |
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| T |
32856488 |
gctaaattaggttttaatgggatagaagttagggtttctgagactggttggccaagtaaaggtgactctgatgaaattggtgcatcattgaaaaatgctg |
32856389 |
T |
|
| Q |
330 |
caacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgaggttggaagtttacttgtttgcattgtttaa |
429 |
Q |
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|| |||||| | || || |||| |||||||||| |||| |||||||||||||||||||||||||||| |||||| || ||||||||||| ||||| |
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| T |
32856388 |
aaatttataacaagaatttattgaggagacaaatgaagaatgaagggacacctttgaatcctagaatgagattggaatcatatttgtttgcattatttaa |
32856289 |
T |
|
| Q |
430 |
tgaa |
433 |
Q |
| |
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|||| |
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| T |
32856288 |
tgaa |
32856285 |
T |
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