View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7362_low_1 (Length: 707)

Name: NF7362_low_1
Description: NF7362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7362_low_1
NF7362_low_1
[»] chr1 (3 HSPs)
chr1 (14-707)||(29179821-29180512)
chr1 (484-535)||(29177546-29177597)
chr1 (194-226)||(29175804-29175836)


Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 14 - 707
Target Start/End: Original strand, 29179821 - 29180512
Alignment:
Q  14 gacatcaaaacaggaaacggtgcccttcgatatacacccttatgaaaaggcaacaatacataggttctaagtttcatatccatcatttggagttgagaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29179821 gacatcaaaacaggaaacggtgcccttcgatatacacccttatgaaaaggcaacaatacataggttctaaggttcatatccatcatttggagttgagaca 29179920  T
Q  114 atagagtaccaagcataattggatgccatagtaaattgaactccaattaaatatctcaaacaccgcaaaagattttattccaaaacaaatttaattttca 213  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29179921 atagagtaccaagcataattggatgccatagtaaatggaactccaattaaatatctcaaacaccgccaaagattttattccaaaacaaatttaattttca 29180020  T
Q  214 atgtaaatcctagttacttcctatggggttctgcttccccggtaagtcattctccaacaaaaccacccacaacgtaccactatactgaataatgaattca 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29180021 atgtaaatcctagttacttcctatggggttatgcttccccggtaagtcattctccaacaaaaccacccacaacgtaccactatactgaataatgaattca 29180120  T
Q  314 tttttcaaaggcataaccattttcaaaatccatattctttctcaggaaaagttctctatttatgactatcctattcccatatcaatgttgtggttgatgg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29180121 tttttcaaaggcataaccattttcaaaatccatattctttctcaggaaaagttctctatttatgactatcctattcccatatcaatgttgtgggtgatgg 29180220  T
Q  414 aatgtatattcacactcgtaaaggaagtagatatctcacacagaaggaaacataacaggtgttactgtgaaaatacatacatgaagccccggaattagac 513  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29180221 aatgtatattcacactcgtaaaggaagtagatatatcacacagaaggaaacataacaggtgttactgtgaaaatacatacatgaagccccagaattagac 29180320  T
Q  514 taatgcaccaattctattttacaacgttnnnnnnnntgttccaaaaacctcactatcgatattccatatatccaccataatattcaaactatcaccagaa 613  Q
    ||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29180321 taatgcaccaattctattttacaacattaaaaaaaatgttccaaaaacctcactatcgatattcc--atatccaccataatattcaaactatcaccagaa 29180418  T
Q  614 gtaaaatacatgacctaaaattgtaccattcacctaaattacaacccaaatcatttaacaaaactaaagcaaggcatagtaaccctaacatacc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29180419 gtaaaatacatgacctaaaattgtaccattcacctaaattacaacccaaatcatttaacaaaactaaagcaaggcatagtaacactaacatacc 29180512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 29177546 - 29177597
Alignment:
Q  484 aaatacatacatgaagccccggaattagactaatgcaccaattctattttac 535  Q
    |||||| ||||||| |||| | ||||||||||||| ||||||||||||||||    
T  29177546 aaatacttacatgatgccctgaaattagactaatggaccaattctattttac 29177597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 29175804 - 29175836
Alignment:
Q  194 caaaacaaatttaattttcaatgtaaatcctag 226  Q
    ||||||||||| |||||||||||||||||||||    
T  29175804 caaaacaaattcaattttcaatgtaaatcctag 29175836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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