View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7363_high_17 (Length: 240)
Name: NF7363_high_17
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7363_high_17 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 183061 - 183289
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183061 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
183160 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183161 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
183260 |
T |
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| Q |
212 |
cgcccctaggtattctctacctacccacc |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
183261 |
cgcccctaggtattctctacctacccacc |
183289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 494455 - 494227
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494455 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
494356 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494355 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
494256 |
T |
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| Q |
212 |
cgcccctaggtattctctacctacccacc |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
494255 |
cgcccctaggtattctctacctacccacc |
494227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 18192117 - 18191889
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18192117 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
18192018 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18192017 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
18191918 |
T |
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| Q |
212 |
cgcccctaggtattctctacctacccacc |
240 |
Q |
| |
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|||||||||||||||| |||||||||||| |
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| T |
18191917 |
cgcccctaggtattctgtacctacccacc |
18191889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 16337238 - 16337426
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
16337238 |
catcaggtcaccaacttccttaaccttcctgcactgggcaggcgtcaacccccatacatggtcttactactttgcagagacctgtatttttgataaacag |
16337337 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
200 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
16337338 |
tcacttaagcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
16337426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 50525982 - 50525850
Alignment:
| Q |
18 |
gtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacagtcgccc |
117 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
50525982 |
gtcaccaacttccttaaccttccggcactggacagacgtcagcccccatacatggtcttacgactttgcgaagacctgtgtttttgataaacagtcgccc |
50525883 |
T |
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| Q |
118 |
gggcctggtcactgcgaccccctttgtgaggag |
150 |
Q |
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||||||||||||||||||||| ||| ||||||| |
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| T |
50525882 |
gggcctggtcactgcgaccccttttatgaggag |
50525850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 29443344 - 29443302
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggc |
54 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443344 |
catcaggtcaccaacttccttaaccttccggcactgggcaggc |
29443302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 42247894 - 42247850
Alignment:
| Q |
151 |
gcaccccttctcccgaagttacggggctattttgccgagttcctt |
195 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42247894 |
gcaccccttctcccgaagttacggggtcattttgccgagttcctt |
42247850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 14404984 - 14404756
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404984 |
catcaggtcaccaacttccttaaccttccggcactgggcagacgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
14404885 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404884 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
14404785 |
T |
|
| Q |
212 |
cgcccctaggtattctctacctacccacc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14404784 |
cgcccctaggtattctctacctacccacc |
14404756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 34659454 - 34659226
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34659454 |
catcgggtcaccaacttccttaaccttccggcactaggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgcttttggtaaacag |
34659355 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
34659354 |
tcgccagggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccaagttccttagagagagttgtctcg |
34659255 |
T |
|
| Q |
212 |
cgcccctaggtattctctacctacccacc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34659254 |
cgcccctaggtattctctacctacccacc |
34659226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 55622 - 55434
Alignment:
| Q |
12 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
55622 |
catcaggtcaccaacttccttaaccttcctgcactgggcaggcgtcaacccccatacatggtcttactactttgcagagacctgtatttttgataaacag |
55523 |
T |
|
| Q |
112 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
200 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
55522 |
tcacttaagcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
55434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 7869276 - 7869346
Alignment:
| Q |
170 |
tacggggctattttgccgagttccttagagagagttgtctcgcgcccctaggtattctctacctacccacc |
240 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||| | | ||||||||||||||||||||||||| |
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| T |
7869276 |
tacgggtctattttatcgagttccttagagagggttgtctcacactcctaggtattctctacctacccacc |
7869346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 7869234 - 7869275
Alignment:
| Q |
90 |
gacctgtgtttttggtaaacagtcgcccgggcctggtcactgc |
132 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
7869234 |
gacctgtgtttt-ggtaaacagtcgcccggacctggtcactgc |
7869275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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