View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7363_high_19 (Length: 228)

Name: NF7363_high_19
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7363_high_19
NF7363_high_19
[»] chr4 (8 HSPs)
chr4 (107-228)||(12088602-12088724)
chr4 (4-109)||(43288003-43288108)
chr4 (14-109)||(13010399-13010493)
chr4 (1-51)||(43472251-43472301)
chr4 (15-82)||(11913948-11914015)
chr4 (34-100)||(31767325-31767390)
chr4 (69-111)||(6663739-6663781)
chr4 (65-111)||(31890167-31890213)
[»] chr5 (3 HSPs)
chr5 (107-228)||(36331902-36332024)
chr5 (168-228)||(40351936-40351996)
chr5 (69-111)||(25634833-25634875)
[»] chr7 (1 HSPs)
chr7 (5-109)||(32352290-32352394)
[»] chr1 (1 HSPs)
chr1 (1-109)||(43254263-43254371)
[»] chr2 (3 HSPs)
chr2 (1-109)||(27107378-27107486)
chr2 (65-111)||(1234941-1234987)
chr2 (61-109)||(8424678-8424726)
[»] scaffold0002 (2 HSPs)
scaffold0002 (107-228)||(420065-420187)
scaffold0002 (147-218)||(215489-215560)
[»] chr3 (4 HSPs)
chr3 (107-218)||(20160195-20160293)
chr3 (14-111)||(9372059-9372156)
chr3 (49-100)||(14655064-14655114)
chr3 (53-109)||(14658325-14658380)
[»] chr8 (3 HSPs)
chr8 (14-109)||(22264494-22264588)
chr8 (14-109)||(609804-609898)
chr8 (14-100)||(38678841-38678926)
[»] chr6 (1 HSPs)
chr6 (53-109)||(2936003-2936058)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 12088724 - 12088602
Alignment:
Q  107 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12088724 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 12088625  T
Q  207 cttcccct-ggggtagggtacta 228  Q
    |||||||| ||||||||||||||    
T  12088624 cttcccctgggggtagggtacta 12088602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 43288003 - 43288108
Alignment:
Q  4 ccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccct 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288003 ccgttaatgacttgtttatttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccct 43288102  T
Q  104 taaata 109  Q
    ||||||    
T  43288103 taaata 43288108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 13010493 - 13010399
Alignment:
Q  14 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    |||||||| ||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||| ||||    
T  13010493 cttgtttgcttacttcaccgttaccgacttcaaatcaccgcaatttcaagaacagataagtttactt-atatccttctagtttattctctttaata 13010399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43472251 - 43472301
Alignment:
Q  1 tcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcac 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43472251 tcaccgttaatgacttatttgtttatttcaacattaccgacttcgaatcac 43472301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 11914015 - 11913948
Alignment:
Q  15 ttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttga 82  Q
    ||||||||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  11914015 ttgtttgtttacttcatcgttatcgacttcaaatcaccacaatttcaagaacagataagtttccttga 11913948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 31767390 - 31767325
Alignment:
Q  34 ttaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 100  Q
    ||||||| ||| ||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  31767390 ttaccgagttcaaattaccgcaatttcaagaa-agataagtttacttgttatccctcttatttattc 31767325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 6663781 - 6663739
Alignment:
Q  69 ataagtttacttgatatccctcttgtttattcccttaaatact 111  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||    
T  6663781 ataagtttacttgatatctctcttgtttattctctttaatact 6663739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 31890167 - 31890213
Alignment:
Q  65 acagataagtttacttgatatccctcttgtttattcccttaaatact 111  Q
    ||||| |||||||||||||||| ||||||||||||| ||| ||||||    
T  31890167 acagaaaagtttacttgatatctctcttgtttattctctttaatact 31890213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 36332024 - 36331902
Alignment:
Q  107 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36332024 atactatgtatgaacatagtagaattgaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 36331925  T
Q  207 cttcccct-ggggtagggtacta 228  Q
    |||||||| ||||||||||||||    
T  36331924 cttcccctgggggtagggtacta 36331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 40351996 - 40351936
Alignment:
Q  168 ttaggacatctctctttcaaggaggcaacggggattcgacttcccctggggtagggtacta 228  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  40351996 ttaggacatctctctttcaaggaggcaacggggattcgactcccctgggggtagggtacta 40351936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 25634875 - 25634833
Alignment:
Q  69 ataagtttacttgatatccctcttgtttattcccttaaatact 111  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||    
T  25634875 ataagtttacttgatatctctcttgtttattctctttaatact 25634833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 32352394 - 32352290
Alignment:
Q  5 cgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccctt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32352394 cgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcgctt 32352295  T
Q  105 aaata 109  Q
    |||||    
T  32352294 aaata 32352290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43254263 - 43254371
Alignment:
Q  1 tcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  43254263 tcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccacaatttcaagaacagataagtttatttgatatccctcttgtttattc 43254362  T
Q  101 ccttaaata 109  Q
    |||||||||    
T  43254363 ccttaaata 43254371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27107378 - 27107486
Alignment:
Q  1 tcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  27107378 tcaccattaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatattcctcttgattattc 27107477  T
Q  101 ccttaaata 109  Q
    |||||||||    
T  27107478 ccttaaata 27107486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1234941 - 1234987
Alignment:
Q  65 acagataagtttacttgatatccctcttgtttattcccttaaatact 111  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  1234941 acagataagtttacttgatatctctcttgtttattctctttaatact 1234987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 8424678 - 8424726
Alignment:
Q  61 aagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||| ||||    
T  8424678 aagaacggatgagtttacttgatatccctcttgtttattctcttcaata 8424726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 420187 - 420065
Alignment:
Q  107 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 206  Q
    ||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  420187 atactatgtacaaacatagtagaatggaggtcaagcaagtatgcccccatcgtctagtggtttacgacatctctctttcaaggaggcaacggggattcga 420088  T
Q  207 cttcccct-ggggtagggtacta 228  Q
    |||||||| ||||||||||||||    
T  420087 cttcccctaggggtagggtacta 420065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 215489 - 215560
Alignment:
Q  147 atgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcgacttcccctgggg 218  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  215489 atgcccctatcgtctagtggttcaggacatctctctttcaaggaggcatcggggattcgacttcccctgggg 215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 20160195 - 20160293
Alignment:
Q  107 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 206  Q
    ||||||||||||||||||||||||||||||| ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20160195 atactatgtatgaacatagtagaatggaggttgggc-------------tcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 20160281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 9372156 - 9372059
Alignment:
Q  14 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaattt-caagaacagataagtttacttgatatccctcttgtttattcccttaaatact 111  Q
    ||||||| |||| |||| | ||||||||||| ||||||| || ||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||||||    
T  9372156 cttgtttatttacttcaccgttaccgacttcaaatcaccacagttttcaagaa-agataagtttacttgttatccctcttgtttattctctttaatact 9372059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 14655064 - 14655114
Alignment:
Q  49 caccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 100  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||| ||||    
T  14655064 caccgcaatttcaagaa-agataagtttacttgttatctctcttgttaattc 14655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 14658325 - 14658380
Alignment:
Q  53 gcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| |||| ||| ||||    
T  14658325 gcaatttcaagaa-agatgagtttacttgttatccctcttgttaattctctttaata 14658380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 22264494 - 22264588
Alignment:
Q  14 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    |||||||||||| |||| | ||||| ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||| ||||    
T  22264494 cttgtttgtttacttcaccgttaccaacttcaaatcaccgcaatttcaagaacaaataagtttactt-atatccctctagtttattctctttaata 22264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 609898 - 609804
Alignment:
Q  14 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    |||||||||||| |||| ||||||| || || |||||||||||||||||| | ||||||||||| ||| |||||||||||||||||| ||| ||||    
T  609898 cttgtttgtttacttcaccattaccaacgtcaaatcaccgcaatttcaagga-agataagtttatttgttatccctcttgtttattctctttaata 609804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 38678841 - 38678926
Alignment:
Q  14 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 100  Q
    |||||||| ||| |||| | ||||||||||| |||||||| |||||| | ||||||||||||||||| |||||||||| ||||||||    
T  38678841 cttgtttgcttacttcaccgttaccgacttcaaatcaccgtaatttccaaaacagataagtttactt-atatccctctagtttattc 38678926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 2936058 - 2936003
Alignment:
Q  53 gcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 109  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||||||||| ||| ||||    
T  2936058 gcaatttcaagaa-agataagattaattgttatccctcttgtttattctctttaata 2936003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University