View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7363_low_12 (Length: 331)
Name: NF7363_low_12
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7363_low_12 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 62 - 318
Target Start/End: Original strand, 24859179 - 24859435
Alignment:
| Q |
62 |
agaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc |
161 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24859179 |
agaaagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc |
24859278 |
T |
|
| Q |
162 |
tgcaacagtataatttataacataccacctctagaataccaccaacagattcaattccatatatggtattcagttcaatgtgaaacaaaactaacacaaa |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24859279 |
tgcaacagtataatttataacataccacctctagaataccaccaacagattcaattccatatatggtatacagttcaatgtgaaacaaaactaacacaaa |
24859378 |
T |
|
| Q |
262 |
attaacagaattaatacattgattcaaaggatggtatttcattgattcaaatgatgt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24859379 |
attaacagaattaatacattgattcaaaggatggtatttcattgattcaaatgatgt |
24859435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 26901907 - 26901741
Alignment:
| Q |
44 |
tttgtaatgctaagttgaagaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
143 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26901907 |
tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
26901808 |
T |
|
| Q |
144 |
cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26901807 |
cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
26901741 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 26897445 - 26897281
Alignment:
| Q |
44 |
tttgtaatgctaagttgaagaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
143 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26897445 |
tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca |
26897346 |
T |
|
| Q |
144 |
cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26897345 |
cgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
26897281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 27205859 - 27205694
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27205859 |
tttgtaatgctaagttgaacgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
27205760 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27205759 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccatcaaca |
27205694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 27210324 - 27210157
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27210324 |
tttgtaatgctaagttgaacgtaagtagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
27210225 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27210224 |
acgtttccactcaaaatcctgcaatagtataatttataacataccacctctagaataccaccaacaga |
27210157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 24047105 - 24047272
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24047105 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
24047204 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24047205 |
acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
24047272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 23674829 - 23674996
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23674829 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
23674928 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23674929 |
acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
23674996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 23679334 - 23679499
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23679334 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
23679433 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
208 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23679434 |
acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
23679499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 24051571 - 24051736
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24051571 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
24051670 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
208 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24051671 |
acgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca |
24051736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 26406715 - 26406882
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26406715 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
26406814 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26406815 |
acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
26406882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 26411181 - 26411348
Alignment:
| Q |
44 |
tttgtaatgctaagttgaa-gaaagcagtatgtggcgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc |
142 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26411181 |
tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc |
26411280 |
T |
|
| Q |
143 |
acgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
210 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26411281 |
acgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacaga |
26411348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 20482644 - 20482535
Alignment:
| Q |
209 |
gattcaattccatatatggtattcagttcaatgtgaaacaaaactaacacaaaattaacagaattaatacattgattcaaaggatggtatttcattgatt |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20482644 |
gattcaattccatatctggtattcagttcaatgtgaaacaaaactaacacaaaattaatagaattaatacattgattcaaaggatgatatttcattgatt |
20482545 |
T |
|
| Q |
309 |
caaatgatgt |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
20482544 |
caaatgatgt |
20482535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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