View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7363_low_2 (Length: 447)
Name: NF7363_low_2
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7363_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 41367934 - 41367675
Alignment:
| Q |
17 |
atttccgtgaaaagtgtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaaattaaatttgaagaag |
116 |
Q |
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| T |
41367934 |
atttccgtgaaaagtgtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaaattaaatttgaagaag |
41367835 |
T |
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| Q |
117 |
nnnnnnngttatttaagtttgagaaaatttatatcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgatt |
216 |
Q |
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| T |
41367834 |
aaaaaaagttatttaagtttgagaaaatttatatcaaggtggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgatt |
41367735 |
T |
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| Q |
217 |
ctcttctctgcttaatccacagcagtgttttctgtcatttccacaaaattttgcttaaat |
276 |
Q |
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| T |
41367734 |
ctcttctctgcttaatccatagcagtgttttctgtcatttccacaaaattttgctcaaat |
41367675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 41367681 - 41367569
Alignment:
| Q |
310 |
ctcaaattaaagttgttcctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagcttt----ttacatcgattattaccaac |
405 |
Q |
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| T |
41367681 |
ctcaaattaaagttgttgctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagctttttaattacatcgattattaccaac |
41367582 |
T |
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| Q |
406 |
aacaaacattatt |
418 |
Q |
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| T |
41367581 |
aacaaacattatt |
41367569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 44281770 - 44281519
Alignment:
| Q |
1 |
accatatagaggtgtgatttccgtgaaaagtgtcattgttgaaaatgctatcgcgagagttttgaacatagtcttcatgataaatggaaaaatgtaacaa |
100 |
Q |
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|||||| ||||| |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||| ||||| |
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| T |
44281770 |
accatacagaggcgtgattccagtgaaaagcgtcattgttgaaaatgctatcgcaagagttttgaacatagtctgcacaataaatagaaaaaattaacag |
44281671 |
T |
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| Q |
101 |
attaaatttgaagaagnnnnnnngtta-tttaagtttgagaaaatttatatcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgt |
199 |
Q |
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| T |
44281670 |
atttagtaccaaaaa--aaaaatgttactttatttttgagaattttttgatcaagatggcaaaagaacaaaaaccatttctcttcttagttcttgcttgt |
44281573 |
T |
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| Q |
200 |
aaccaagctcattgattctcttctctgcttaatccacagcagtgttttctgtca |
253 |
Q |
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| T |
44281572 |
aaccaagctcattgagtctcttctctgctgaatccatagctatgttttctgtca |
44281519 |
T |
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