View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7363_low_23 (Length: 235)

Name: NF7363_low_23
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7363_low_23
NF7363_low_23
[»] chr5 (10 HSPs)
chr5 (1-198)||(34788112-34788317)
chr5 (192-223)||(29875203-29875234)
chr5 (192-223)||(42793567-42793598)
chr5 (193-223)||(23090547-23090577)
chr5 (194-223)||(41610372-41610401)
chr5 (195-223)||(12398946-12398974)
chr5 (195-223)||(12399195-12399223)
chr5 (195-223)||(23090298-23090326)
chr5 (195-223)||(34208538-34208566)
chr5 (195-223)||(42757805-42757833)
[»] chr3 (17 HSPs)
chr3 (190-223)||(41349366-41349399)
chr3 (193-223)||(29371787-29371817)
chr3 (193-223)||(39518656-39518686)
chr3 (194-223)||(1352245-1352274)
chr3 (194-223)||(29014689-29014718)
chr3 (194-223)||(36737833-36737862)
chr3 (194-223)||(38855566-38855595)
chr3 (195-223)||(1351996-1352024)
chr3 (195-223)||(18996967-18996995)
chr3 (195-223)||(18997216-18997244)
chr3 (195-223)||(18999506-18999534)
chr3 (195-223)||(18999755-18999783)
chr3 (195-223)||(32677726-32677754)
chr3 (195-223)||(39528749-39528777)
chr3 (195-223)||(39528998-39529026)
chr3 (195-223)||(41349620-41349648)
chr3 (195-223)||(46878984-46879012)
[»] chr2 (5 HSPs)
chr2 (191-223)||(10112335-10112367)
chr2 (191-223)||(43041098-43041130)
chr2 (195-223)||(15234004-15234032)
chr2 (195-223)||(43040849-43040877)
chr2 (195-223)||(44104546-44104574)
[»] chr8 (11 HSPs)
chr8 (192-223)||(27027660-27027691)
chr8 (194-223)||(9739984-9740013)
chr8 (194-223)||(27024432-27024461)
chr8 (194-223)||(33837978-33838007)
chr8 (195-223)||(2509045-2509073)
chr8 (195-223)||(9740235-9740263)
chr8 (195-223)||(25106460-25106488)
chr8 (195-223)||(28379196-28379224)
chr8 (195-223)||(33837729-33837757)
chr8 (195-223)||(45334276-45334304)
chr8 (195-223)||(45334525-45334553)
[»] chr7 (14 HSPs)
chr7 (193-223)||(46467333-46467363)
chr7 (194-223)||(4405358-4405387)
chr7 (194-223)||(29427413-29427442)
chr7 (194-223)||(29890825-29890854)
chr7 (194-223)||(43701550-43701579)
chr7 (195-223)||(6387941-6387969)
chr7 (195-223)||(17904163-17904191)
chr7 (195-223)||(17904412-17904440)
chr7 (195-223)||(26770179-26770207)
chr7 (195-223)||(29723386-29723414)
chr7 (195-223)||(29891075-29891103)
chr7 (195-223)||(37179331-37179359)
chr7 (195-223)||(37179580-37179608)
chr7 (195-223)||(46467584-46467612)
[»] chr1 (10 HSPs)
chr1 (193-223)||(4817267-4817297)
chr1 (194-223)||(4055483-4055512)
chr1 (194-223)||(10737700-10737729)
chr1 (194-223)||(46220508-46220537)
chr1 (194-223)||(47669118-47669147)
chr1 (194-223)||(48565066-48565095)
chr1 (195-223)||(9831503-9831531)
chr1 (195-223)||(18126851-18126879)
chr1 (195-223)||(33020206-33020234)
chr1 (195-223)||(47669368-47669396)
[»] chr6 (5 HSPs)
chr6 (194-223)||(27312113-27312142)
chr6 (194-223)||(27312365-27312394)
chr6 (194-223)||(32274433-32274462)
chr6 (195-223)||(8504733-8504761)
chr6 (195-223)||(29302520-29302548)
[»] chr4 (4 HSPs)
chr4 (194-223)||(19256185-19256214)
chr4 (194-223)||(36016278-36016307)
chr4 (191-223)||(8956025-8956057)
chr4 (195-223)||(19257109-19257137)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34788317 - 34788112
Alignment:
Q  1 ttaatctaaaaattaggactggattgacttgaa--------ttgggggagaaaaatgacacacaatccaaacaaggaccagaaatgcaaattaagcttga 92  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  34788317 ttaatctaaaaattaggactggattgacttgaaagacattattgggggagaaaaatgacacacaatccaaacaaggaccataaatgcaaattaagcctga 34788218  T
Q  93 ctattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacagttaagtagagatttcaactaatttgataatggttggataatta 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34788217 ctattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacatttaagtagagatttcaactaatttgataatggttggataatta 34788118  T
Q  193 tatact 198  Q
    ||||||    
T  34788117 tatact 34788112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 29875234 - 29875203
Alignment:
Q  192 atatactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||||    
T  29875234 atatactccctccattccttttcttttgatgt 29875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 42793598 - 42793567
Alignment:
Q  192 atatactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||||    
T  42793598 atatactccctccattccttttcttttgatgt 42793567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 23090577 - 23090547
Alignment:
Q  193 tatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||    
T  23090577 tatactccctccattccttttcttttgatgt 23090547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 41610372 - 41610401
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  41610372 atactccctccattccttttcttttgatgt 41610401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 12398946 - 12398974
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgt 12398974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 12399223 - 12399195
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgt 12399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 23090298 - 23090326
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgt 23090326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 34208538 - 34208566
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgt 34208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 42757805 - 42757833
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgt 42757833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 41349366 - 41349399
Alignment:
Q  190 ttatatactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  41349366 ttatatactccctccattccttttcttttgatgt 41349399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 29371817 - 29371787
Alignment:
Q  193 tatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||    
T  29371817 tatactccctccattccttttcttttgatgt 29371787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 39518686 - 39518656
Alignment:
Q  193 tatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||    
T  39518686 tatactccctccattccttttcttttgatgt 39518656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 1352274 - 1352245
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  1352274 atactccctccattccttttcttttgatgt 1352245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 29014689 - 29014718
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  29014689 atactccctccattccttttcttttgatgt 29014718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 36737833 - 36737862
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgt 36737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 38855595 - 38855566
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgt 38855566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 1351996 - 1352024
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgt 1352024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 18996967 - 18996995
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgt 18996995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 18997244 - 18997216
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgt 18997216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 18999506 - 18999534
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgt 18999534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 18999783 - 18999755
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgt 18999755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 32677754 - 32677726
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgt 32677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 39528749 - 39528777
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgt 39528777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 39529026 - 39528998
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgt 39528998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 41349648 - 41349620
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgt 41349620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 46879012 - 46878984
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgt 46878984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 10112335 - 10112367
Alignment:
Q  191 tatatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||||    
T  10112335 tatatactccctccattccttttcttttgatgt 10112367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 43041130 - 43041098
Alignment:
Q  191 tatatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||||    
T  43041130 tatatactccctccattccttttcttttgatgt 43041098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 15234032 - 15234004
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgt 15234004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 43040849 - 43040877
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgt 43040877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 44104546 - 44104574
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgt 44104574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 27027691 - 27027660
Alignment:
Q  192 atatactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||||    
T  27027691 atatactccctccattccttttcttttgatgt 27027660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 9739984 - 9740013
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  9739984 atactccctccattccttttcttttgatgt 9740013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 27024432 - 27024461
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  27024432 atactccctccattccttttcttttgatgt 27024461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 33838007 - 33837978
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  33838007 atactccctccattccttttcttttgatgt 33837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 2509073 - 2509045
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgt 2509045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 9740263 - 9740235
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgt 9740235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 25106488 - 25106460
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgt 25106460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 28379224 - 28379196
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgt 28379196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 33837729 - 33837757
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgt 33837757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 45334276 - 45334304
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgt 45334304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 45334553 - 45334525
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgt 45334525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 46467333 - 46467363
Alignment:
Q  193 tatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||    
T  46467333 tatactccctccattccttttcttttgatgt 46467363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 4405387 - 4405358
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  4405387 atactccctccattccttttcttttgatgt 4405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 29427442 - 29427413
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgt 29427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 29890825 - 29890854
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  29890825 atactccctccattccttttcttttgatgt 29890854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 43701550 - 43701579
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  43701550 atactccctccattccttttcttttgatgt 43701579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 6387969 - 6387941
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  6387969 tactccctccattccttttcttttgatgt 6387941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 17904163 - 17904191
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgt 17904191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 17904440 - 17904412
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgt 17904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 26770179 - 26770207
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgt 26770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 29723414 - 29723386
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgt 29723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 29891103 - 29891075
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  29891103 tactccctccattccttttcttttgatgt 29891075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 37179331 - 37179359
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgt 37179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 37179608 - 37179580
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgt 37179580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 46467612 - 46467584
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgt 46467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 4817267 - 4817297
Alignment:
Q  193 tatactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||||    
T  4817267 tatactccctccattccttttcttttgatgt 4817297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 4055483 - 4055512
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgt 4055512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 10737700 - 10737729
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgt 10737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 46220537 - 46220508
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgt 46220508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 47669118 - 47669147
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  47669118 atactccctccattccttttcttttgatgt 47669147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 48565095 - 48565066
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  48565095 atactccctccattccttttcttttgatgt 48565066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 9831503 - 9831531
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgt 9831531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 18126851 - 18126879
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgt 18126879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 33020206 - 33020234
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgt 33020234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 47669396 - 47669368
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgt 47669368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 27312113 - 27312142
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgt 27312142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 27312394 - 27312365
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgt 27312365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 32274433 - 32274462
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgt 32274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 8504733 - 8504761
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgt 8504761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 29302548 - 29302520
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgt 29302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 19256185 - 19256214
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  19256185 atactccctccattccttttcttttgatgt 19256214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 36016278 - 36016307
Alignment:
Q  194 atactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgt 36016307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 8956057 - 8956025
Alignment:
Q  191 tatatactccctccattccttttcttttgatgt 223  Q
    ||||||||||||||||||||||| |||||||||    
T  8956057 tatatactccctccattcctttttttttgatgt 8956025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 19257137 - 19257109
Alignment:
Q  195 tactccctccattccttttcttttgatgt 223  Q
    |||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgt 19257109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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