View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7363_low_6 (Length: 412)
Name: NF7363_low_6
Description: NF7363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7363_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 3 - 408
Target Start/End: Complemental strand, 44782881 - 44782476
Alignment:
| Q |
3 |
atggaggagcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagtttacctggt |
102 |
Q |
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| T |
44782881 |
atggaggagcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagtttacctggt |
44782782 |
T |
|
| Q |
103 |
tgacctacaatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatggatagcataa |
202 |
Q |
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| T |
44782781 |
tgacctacaatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatggatagcataa |
44782682 |
T |
|
| Q |
203 |
catatttttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcatacttgtaaa |
302 |
Q |
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| T |
44782681 |
catatttttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcatacttgtaaa |
44782582 |
T |
|
| Q |
303 |
tcctaaacaactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttggttttcttct |
402 |
Q |
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| T |
44782581 |
tcctaaacaactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttggttttcttct |
44782482 |
T |
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| Q |
403 |
cactcg |
408 |
Q |
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| T |
44782481 |
ctctcg |
44782476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 361
Target Start/End: Complemental strand, 48422874 - 48422547
Alignment:
| Q |
47 |
atacaaggaactcagaaaatacaaaattcatttgacttaa----cagtagtttacctggttgacctacaatagttcaccacaacaggataattcatgatt |
142 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || ||||||||| || || || | || ||||| |
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| T |
48422874 |
atacaaggaactcagaaaatacagatttcatttgacttaatcatcagtagtttacctggttgaccaacgatagttcactactgcaagacagtttgtgatt |
48422775 |
T |
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| Q |
143 |
gtgttgtctgtatagcacatcgagattgagtt-cccttgttctgataaatggatagcataacatatttttgtaatatctggtcttgcgtgggtatacata |
241 |
Q |
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||||||| || ||||||| ||||||||||| |||| ||||||| ||||||||||||||| |||||||||||| |||||||| | |||||| | | |
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| T |
48422774 |
aggttgtctatacagcacattgagattgagttggccttcttctgatggatggatagcataacaagtttttgtaatatatggtcttgtgggggtatgtaaa |
48422675 |
T |
|
| Q |
242 |
cttcggtaatgaagattgatttgcttgccgctgcattatgtttgct--------gagcatacttgtaaatcctaaacaactatgggggccattattccgc |
333 |
Q |
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|||| |||||||| |||| ||||| ||||||| ||||||||| || ||||||||| |||||| ||||||| |||||||| ||||| | | |
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| T |
48422674 |
cttcaaaaatgaagaatgatatgcttattgctgcatcatgtttgctactttgcggaacatacttgtcaatcctgaacaactttgggggccgttattacac |
48422575 |
T |
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| Q |
334 |
tagaaatttgtttttgctttggagggat |
361 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
48422574 |
tagaaacatgtttttgctttggagggat |
48422547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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