View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7364_low_2 (Length: 412)
Name: NF7364_low_2
Description: NF7364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7364_low_2 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 16657593 - 16657977
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16657593 |
atctgattcgacttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatataacaagt |
16657692 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657693 |
ccattagccatccaaagtttaatgagttcttccttatccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
16657792 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657793 |
agttaaagtagctcagtctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
16657892 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657893 |
tttaaagcgtaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
16657977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 16868580 - 16868196
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
16868580 |
atctgatttgatttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
16868481 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868480 |
ccattagccatccaaagttgaatgaaaaattccttttccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
16868381 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16868380 |
agttaaagtagctcagtctcaaagcagacatgacatggttatcatctgctaaattccaaaactcactttccaccacagaagtccattgatgttcatcgct |
16868281 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868280 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
16868196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 17069087 - 17069471
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| || |||||||||| ||||| | |
|
|
| T |
17069087 |
atctgatttgacttcttgaaaaaatgacctttggtataattcatcccatatctcattaccaacatgctccatctgtaaattacctctagatgtaacaaat |
17069186 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17069187 |
ccattagccatccaaagatgaatgagcctttccttcaccattacaaaatccttaggaaaaacaacacagaaagtaaaacatggcctcaatgacaatttca |
17069286 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069287 |
agttatagtagcttagtctcaaagcagacatgacagggttctcatcgtctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
17069386 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069387 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
17069471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 16787548 - 16787932
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16787548 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
16787647 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||| ||||||| |||||||| ||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
16787648 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
16787747 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||| | | | ||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
16787748 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtacagaaatccattgatgttcgtcgct |
16787847 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16787848 |
tgtaaatcgcaaactgcttcccaatactttagcagcaagagttgaacccacacattttctcactaacttcttgcctatttccaca |
16787932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 16780680 - 16781044
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
16780680 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
16780779 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
16780780 |
ccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacacggccttaaggacaaattca |
16780879 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||| | ||||||| |||| ||| ||||||| |||||||||| ||||||| |||||||||||| || | |
|
|
| T |
16780880 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataacttccaaagctcactttcctttacagaaagccattgatgttcctcatt |
16780979 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||| |||||||||||||||||| |||||| |
|
|
| T |
16780980 |
tttaaagcgcaaaaggcttcccaaaaccttggcagcaagtggtgaacccacacattttatcacta |
16781044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 16796750 - 16797134
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| || |||||||||| ||||||| |
|
|
| T |
16796750 |
atctgatttgacttcttgaaaaaatgacctttggtataattcatcccatatcccattaccaacatgctccatctgtaaattacctctagatgtaacaagt |
16796849 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16796850 |
ccattagccatccaaagatgaatgagatgttccttcaccatttcaaaatccttaggaaaaacagcgcagaaagtaaaacatggcctcaatgacaatttca |
16796949 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||||||||| | | ||||||||||||||| | | | | | | || |||||||||||| |||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
16796950 |
agttaaagtagcttagtgtcaaagcagacatgatacgatcaacctgaggtaaattccaaaattcactttccagtacagaaatccattgatgttcgtcgct |
16797049 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
16797050 |
tgtaaagcgcaaactgcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttcttgcctattgccaca |
16797134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 16987039 - 16987419
Alignment:
| Q |
17 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
16987039 |
gatttaacttcttgaaaaaatgatctttgccataattgattccatacctcatcaccaacatgctccatctgtaaattacctctagatgtaacaagtccat |
16987138 |
T |
|
| Q |
117 |
tagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttcaagtt |
216 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||| | ||||||||||| ||| |
|
|
| T |
16987139 |
tagccatccaaagatgaatgagatcttccttcaccatttcaaaatccttaggaaaaacagcacagaaggtaaaacatggccttagtgacaatttcatgtt |
16987238 |
T |
|
| Q |
217 |
aaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgctttta |
316 |
Q |
| |
|
|||||||| | |||||||||||| |||| | | | ||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| || ||| | |
|
|
| T |
16987239 |
gaagtagcttagtctcaaagcagaaatgataggatcatcctcaggtaaattccaaatctcactttccagtacagaaatccattgatgttcgtcagtttca |
16987338 |
T |
|
| Q |
317 |
aagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||| |
|
|
| T |
16987339 |
cgttgcaaactgcttcccaatactttagcagcaagaggtgaacccacaaattttctcaccaacttcttacctatttccaca |
16987419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 112 - 408
Target Start/End: Complemental strand, 18806677 - 18806381
Alignment:
| Q |
112 |
tccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttc |
211 |
Q |
| |
|
||||||||||| |||||| || || ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
18806677 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18806578 |
T |
|
| Q |
212 |
aagttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgc |
311 |
Q |
| |
|
|| ||||||||||| | ||||||| ||||||||| | | || || || | ||| ||||||||| ||||||| ||||||| |||||||||||| || |
|
|
| T |
18806577 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttcctcag |
18806478 |
T |
|
| Q |
312 |
ttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccacaggttctgctcg |
408 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||||| | ||||||| ||||| | |||||||| |
|
|
| T |
18806477 |
ttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggtgaacccacacattttctcactaactccttgcctattgccacaagctctgctcg |
18806381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 277 - 397
Target Start/End: Original strand, 16837525 - 16837645
Alignment:
| Q |
277 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837525 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
16837624 |
T |
|
| Q |
377 |
aacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16837625 |
aacttttggcctatttccaca |
16837645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 112 - 397
Target Start/End: Complemental strand, 18873671 - 18873386
Alignment:
| Q |
112 |
tccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttc |
211 |
Q |
| |
|
||||||||||| |||||| || || ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
18873671 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18873572 |
T |
|
| Q |
212 |
aagttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgc |
311 |
Q |
| |
|
|| ||||||||||| | |||||| ||||||||| | | || || || | ||| ||||||||| ||||||| ||||||| |||||||||||| || |
|
|
| T |
18873571 |
aaattaaagtagctgagtctcaatacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttcctcag |
18873472 |
T |
|
| Q |
312 |
ttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || |||||||| ||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
18873471 |
ttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggagaacccacacattttctcactaactccttgcctattgccaca |
18873386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 16843397 - 16843748
Alignment:
| Q |
23 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccattagcca |
122 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||| |||||||| ||||| |||||||||| ||| |||||||| || | || || |||||| |||| |
|
|
| T |
16843397 |
acttcttgaaaaaatgatctctggtatagttcattccacacctcattgccaacctcctccatctctaaatttcctctggaggaaataaatccatttgcca |
16843496 |
T |
|
| Q |
123 |
tccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttcaagttaaagta |
222 |
Q |
| |
|
||||||| ||||| | |||||||| ||||| | ||||| |||||||| ||||||||||| |||||||||||| ||||||| ||||| | || |||| |
|
|
| T |
16843497 |
tccaaagatgaattacatcttccttcaccattacaaaatctttaggaaatacagcacaaaatgtaaaacatggcttcaatgataattttagattgtagta |
16843596 |
T |
|
| Q |
223 |
gctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgc |
322 |
Q |
| |
|
||||| | ||||| || || | |||| ||||| ||||||||||| |||||||||| | ||||| ||||||| ||| || ||||||| ||| |
|
|
| T |
16843597 |
gctcagatttaaagctgatat---aattttattatcagataaattccaaatctcactttcctttatagaaagccattgacattcctcagttttaaaccgc |
16843693 |
T |
|
| Q |
323 |
aaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
| ||||||||| | |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16843694 |
agaaggcttcctagtactttggcagcaagaggcgaacccacacattttctaacta |
16843748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 18870676 - 18870507
Alignment:
| Q |
23 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccattagcca |
122 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| || |||| |||||||| ||||| || ||| ||||| | || | | | |||||||| || |
|
|
| T |
18870676 |
acttcttgaaaaaatgatctctcatataattcattccacacttcatgaccaacatgctccacctctaaatttccaatggaagagatgaatccattagtca |
18870577 |
T |
|
| Q |
123 |
tccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaaca |
192 |
Q |
| |
|
|||||| || || ||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
18870576 |
accaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaacctcacaaaaggtaaaaca |
18870507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 37071 - 37455
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37071 |
atctgattcgacttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgcaacaagt |
37170 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37171 |
ccattagccatccaaagttgaatgagattttccttcaccattttaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
37270 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37271 |
agttaaagtagctcagtctcaaagcagacatgacttggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
37370 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37371 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
37455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 38939939 - 38939575
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
38939939 |
atctgatttgacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctcttgatgtaacaagt |
38939840 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
38939839 |
ccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaattaaaacatggcctcaaggacaatttca |
38939740 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||| | ||||||| |||| ||||||||||| |||||||||| ||||||| |||||||||||| || || |
|
|
| T |
38939739 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagctcactttcctttacagaaaaccattgatgttcctcact |
38939640 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38939639 |
tttaaagcgcaaaaggcttcccaatactttggcagcaagaggtgaacccacacattttctcacta |
38939575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 7053848 - 7053482
Alignment:
| Q |
11 |
atatctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| || || |
|
|
| T |
7053848 |
atatcagatttaacttcttgaaaaaatgatctttgatataattcattccatacctcattaccaagaagctccatctgtaaatttcctctagatgtaagaa |
7053749 |
T |
|
| Q |
111 |
gtccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaattt |
210 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || || ||||| || ||||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
7053748 |
gtccattagccatccaaagatgaatgaggcattccttatgtatctcaaaatctttgggaaaaacagcacaaaaagaaaaacaaggcctcaatggcaattt |
7053649 |
T |
|
| Q |
211 |
caagttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcg |
310 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||||| | ||||| |||| |||||||||||||| |||||| | ||||| ||||||||||| || |
|
|
| T |
7053648 |
caaattatagtagctcagcctcaaagcagacatgattggattatcctcagataaattccaaaacttgctttcctttatagaaagccattgatgtttctca |
7053549 |
T |
|
| Q |
311 |
cttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
| |||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
7053548 |
cgtttaaatcgtaaaaggcttcctaatacttttgctgcaagaggtgaacccacacattttctcacta |
7053482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 25293755 - 25293660
Alignment:
| Q |
98 |
ctagatgcaacaagtccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacat |
193 |
Q |
| |
|
||||||| || || |||||||||||||||||| ||| | | |||||||||||| |||| | ||| || ||||| | ||||||||||| ||||||| |
|
|
| T |
25293755 |
ctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaagcaaaacat |
25293660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 12430 - 12814
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
12430 |
atctgatttaacttcttcaaataatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
12529 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12530 |
ccattagccatccaaagttgaatgagattttccttcaccatttcataatctttgggaaaaacagcacagaaagtaaaacatggcctcaatgacaatttca |
12629 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| | | | | | |||| |||| |||||||||||||||| | |||||||||||||||||||| || || |
|
|
| T |
12630 |
agttaaaatagcttagtctcaaagcagacatgataggatcaacctcaggtaaactccaaaactcactttctagtacagaaatccattgatgttcgtcact |
12729 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
| |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
12730 |
tgtaaagcacaaactgcttcctaatactttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccaca |
12814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 17636 - 18000
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
17636 |
atctgatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaacatgctccatctgtaagtttcctcttgatgtaacaagt |
17735 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||| | |||||| | |||||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |
|
|
| T |
17736 |
ccattagccatccaaaatggaatgatattttccttcaccatttcaaaatccttaggaaaaacagtacaaaaagtaaaacagggcctcaaggacgatttca |
17835 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
| ||||||||||| | ||||||||||||||| | | ||||||| |||| ||||||||||| |||||||||| ||||||| |||||||||||| || || |
|
|
| T |
17836 |
aattaaagtagcttagtctcaaagcagacattatagggttatcctcagataaattccaaacctcactttcctttacagaaagccattgatgttcctcact |
17935 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
||||||||||| |||||||||||| || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
17936 |
tttaaagcgcagaaggcttcccaaaaccttggcagcaagaggtgaacccacgcattttctcacta |
18000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 8092 - 8472
Alignment:
| Q |
17 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| |||||||||||||| |||||| | |||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
8092 |
gatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaacgtgctccatctgtaaatttcctctagatgtaacaagaccat |
8191 |
T |
|
| Q |
117 |
tagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttcaagtt |
216 |
Q |
| |
|
||||||||||||| |||||||| | ||||||| ||||||| ||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
8192 |
tagccatccaaagatgaatgagattttccttaaccatttcaaaacccttaggaaaaacagcacagaaagcaaaacatggtctcaatgacaatttcaagtt |
8291 |
T |
|
| Q |
217 |
aaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgctttta |
316 |
Q |
| |
|
||||||||| | ||||||||||||||||| | | | | |||| ||||||||||| |||||||||| |||||||||||||||||||| | |||| || |
|
|
| T |
8292 |
aaagtagcttattctcaaagcagacatgatagaatcaacctcaggcaaattccaaaattcactttccagtacagaaatccattgatgttcgttgcttgta |
8391 |
T |
|
| Q |
317 |
aagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
8392 |
cagcacaaactgctacccaatactttagcagcaagaggtgaacccacacattttctcactaactttttgcctattgccaca |
8472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 13377673 - 13378036
Alignment:
| Q |
13 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| |
|
|
| T |
13377673 |
atctgatttaacttcttgaaaaaatgatctttggcataactcatcccatacctcattaccaacatgctccgt-tgtaagtttcctctagatgtaacaagt |
13377771 |
T |
|
| Q |
113 |
ccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
212 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13377772 |
ccattagccatccaaagtagaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaaggacaatttca |
13377871 |
T |
|
| Q |
213 |
agttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgct |
312 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||| | ||||||| |||| ||||||||||| || ||||||| ||||||| |||||||||||| || || |
|
|
| T |
13377872 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagcttactttcctttacagaaagccattgatgttcctcact |
13377971 |
T |
|
| Q |
313 |
tttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcacta |
377 |
Q |
| |
|
|||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
13377972 |
tttaaagcgcgaaaggcttcccaaaaccttggcagcaagaggtgaacccacacattttctcacta |
13378036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 8736 - 9094
Alignment:
| Q |
17 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccat |
116 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8736 |
gatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaacatgctccatctgtaaatttcctctagatgtaacaagtccat |
8835 |
T |
|
| Q |
117 |
tagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttcaagtt |
216 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
8836 |
tagccatccaaagttgaatgagattttccttcaccattttaaaatctttaggaaaaacagcacaaaaagtaaaacatggtctcaaggacaatttcaaatt |
8935 |
T |
|
| Q |
217 |
aaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgctttta |
316 |
Q |
| |
|
||||||||| | ||||||||||||||||| | | | ||| |||| ||||||||||| |||||||||| ||||| | |||||||||||| || |||||| |
|
|
| T |
8936 |
aaagtagcttagtctcaaagcagacatgataggatcatcctcagttaaattccaaagctcactttccttgacagagagccattgatgttcctcactttta |
9035 |
T |
|
| Q |
317 |
aagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcac |
375 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9036 |
aagcacaaaagacttcccaatactttggcagcaagaggtgaacccacacattttctcac |
9094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 397
Target Start/End: Original strand, 4263 - 4638
Alignment:
| Q |
23 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgcaacaagtccattagcca |
122 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || |||| |||||||| ||||| || ||| ||||| || | | | ||||||||||| |
|
|
| T |
4263 |
acttcttgaaaaaatgatctcgcatataattcattccacacttcatgaccaacatgctccacctctaaatttccaacggaagagatgaatccattagcca |
4362 |
T |
|
| Q |
123 |
tccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttcaagttaaagta |
222 |
Q |
| |
|
|||||| || || ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||| || |||||||| |
|
|
| T |
4363 |
accaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataattttaaattaaagta |
4462 |
T |
|
| Q |
223 |
gctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgc |
322 |
Q |
| |
|
||| | ||||||| || |||||| | | || || || | ||| ||||||||| ||||||| ||||||| |||||||||||| || |||||||||||| |
|
|
| T |
4463 |
gctgagtctcaaaacaaacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttcctcacttttaaagcgc |
4562 |
T |
|
| Q |
323 |
-aaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
4563 |
aaaaaggcttcctagtactttggcagcaagaggcgaacccacacattttctcactaactccttgcctattgccaca |
4638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 112 - 397
Target Start/End: Original strand, 9033 - 9318
Alignment:
| Q |
112 |
tccattagccatccaaagttgaatgagttcttccttatccatttctaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttc |
211 |
Q |
| |
|
||||||||||| |||||| || || ||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
9033 |
tccattagccaaccaaagatggatcagtgcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataatttc |
9132 |
T |
|
| Q |
212 |
aagttaaagtagctcaatctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgc |
311 |
Q |
| |
|
|| ||||||||||| | ||||||| ||||||||| | | || || || | ||| ||||||||| ||| ||| ||||||| |||||||||||| || | |
|
|
| T |
9133 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactgtcctttacagaaagccattgatgttcctcac |
9232 |
T |
|
| Q |
312 |
ttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggcctatttccaca |
397 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| || |||||||| ||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
9233 |
ttttaaagcgcaaaagacttcctagtactttggcggcaagaggcgaacccacacattttctcactaactccttgcctattgccaca |
9318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 26707612 - 26707656
Alignment:
| Q |
103 |
tgcaacaagtccattagccatccaaagttgaatgagttcttcctt |
147 |
Q |
| |
|
||||| || |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
26707612 |
tgcaataaatccattagccatccaaagttgaatcaattcttcctt |
26707656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 30338351 - 30338307
Alignment:
| Q |
103 |
tgcaacaagtccattagccatccaaagttgaatgagttcttcctt |
147 |
Q |
| |
|
||||| || |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30338351 |
tgcaataaatccattagccatccaaagttgaatcaattcttcctt |
30338307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University