View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7364_low_4 (Length: 329)
Name: NF7364_low_4
Description: NF7364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7364_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 34273346 - 34273661
Alignment:
| Q |
9 |
gagtgagatgaaagcgaggagttccagggaggaagcaagagcata---------gagcaacatttcacctagcaaagacgggttgacattttcctccatc |
99 |
Q |
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| T |
34273346 |
gagtgagctgaaagcgaggagttccagggaggaagcaagagcatattaactaacgagcaacatttcacctagcaaagactggttgacattttcctccatc |
34273445 |
T |
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| Q |
100 |
tgaagaaatctggattcgttgatcgagcaagaaatcataaaatgaatctgcactaattttctgtcacttataaatagacttgtaaataagaattatttat |
199 |
Q |
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| T |
34273446 |
tgaagaaacctggattcgttgatcgagcaagaaatcatcaaatgaaactgcactaattttctgtcacttataaatagacttgtaaataagaattatttat |
34273545 |
T |
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| Q |
200 |
cattgtacacatacctaggctccctttagagggagaaacataaggagaagttgttcttcaccattggaagccatttggagcttggattcaagcttttaga |
299 |
Q |
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| T |
34273546 |
cattgtacacatacctaagctccctttagagggagaaacataaggagaagttgttcttcaccattggaagccatttggagcttggattcaagcttttaga |
34273645 |
T |
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| Q |
300 |
tgttcttccttctcca |
315 |
Q |
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| T |
34273646 |
tgttcttccttctcca |
34273661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 12062383 - 12062336
Alignment:
| Q |
256 |
ttcaccattggaagccatttggagcttggattcaagcttttagatgttc |
304 |
Q |
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| T |
12062383 |
ttcaccattggaggccatt-ggagcttggattcaagcttgttgatgttc |
12062336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 31999460 - 31999397
Alignment:
| Q |
252 |
gttcttcaccattggaagccatttggagcttggattcaagcttttagatgttcttccttctccat |
316 |
Q |
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| T |
31999460 |
gttcttcaccataggaagccatt-ggagcttggattcaagattgttgatgctcctccttcaccat |
31999397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 3472950 - 3472982
Alignment:
| Q |
155 |
attttctgtcacttataaatagacttgtaaata |
187 |
Q |
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| T |
3472950 |
attttctgccacttataaatagacttgtaaata |
3472982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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