View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7365_low_2 (Length: 530)
Name: NF7365_low_2
Description: NF7365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7365_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 5 - 521
Target Start/End: Original strand, 55427342 - 55427858
Alignment:
| Q |
5 |
aagacatgataaaggttacttctagctgaatactagacctcaagcctcaactttgttatatgtaggcacataggaattgaagataatttactaaacagca |
104 |
Q |
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| T |
55427342 |
aagacatgataaaggttacttctagctgaatactagacctcaagcctcaactttgttatatgtaggcacataggaattgaagataatttactaaacagca |
55427441 |
T |
|
| Q |
105 |
tcaagaagcagcaacaaaactgtaattgcaatgaatgaaagttctctaaacctttccgatccacgctggacattcggaattgagatcttatcaatgtcac |
204 |
Q |
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| T |
55427442 |
tcaagaagcagcaacaaaactgtaattgcaatgaatgaaagttctctaaacctttccgatccacgctggacattcgaaattgagatcttatcaatgtcac |
55427541 |
T |
|
| Q |
205 |
tggaagttatgttttttatcccagtattttctagcccactgcttgtccagttgacaggaaccagaaccgcccacgccaggaatgctataggaacaaagat |
304 |
Q |
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| T |
55427542 |
tggaagttatgttttttatcccagcattttctagcccactgcttgtccagttgacaggaaccagaaccgcccacgccaggaatgctataggaacaaagat |
55427641 |
T |
|
| Q |
305 |
tttaagtctgcacnnnnnnnnnnnnnnnnnnnncatcagtgatcatattctccaatatggtatattcaaacgctgtccataattattgatgatcataccc |
404 |
Q |
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| T |
55427642 |
tttaagtctgcacaaaaagaaacaaaaacaaaacatcagtgatcatattctccaatatggtatattcaaacgctgtccataatgattgatgatcataccc |
55427741 |
T |
|
| Q |
405 |
taacaagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaac |
504 |
Q |
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| T |
55427742 |
taacaagtaaatcctcaagtaaacagcagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaac |
55427841 |
T |
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| Q |
505 |
cgaatatatgatgtcca |
521 |
Q |
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| T |
55427842 |
cgaatatatgatctcca |
55427858 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 505
Target Start/End: Complemental strand, 37418500 - 37418404
Alignment:
| Q |
409 |
aagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaacc |
505 |
Q |
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||||| ||||||||||| ||| |||| ||||| || ||||| ||||| || || |||||||||||| | |||||| |||||||| ||||| |||| |
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| T |
37418500 |
aagtagatcctcaagtatacagcagaatccaagcctgcatgttcaattagttcgggttccggcatttgcaatgcagcaggcatccagttcaagaacc |
37418404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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