View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7365_low_5 (Length: 300)
Name: NF7365_low_5
Description: NF7365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7365_low_5 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13715761 - 13716051
Alignment:
| Q |
1 |
ctaacttgttggacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaa |
100 |
Q |
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| T |
13715761 |
ctaacttgttagacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaa |
13715860 |
T |
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| Q |
101 |
agtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtagga |
200 |
Q |
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| T |
13715861 |
agtaggatatttagggctaatgtatgagggaatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtagga |
13715960 |
T |
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| Q |
201 |
atgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagtattat |
291 |
Q |
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| T |
13715961 |
atgcttagagacttcaccaatggctcaccgggccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattat |
13716051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 71 - 290
Target Start/End: Original strand, 36099 - 36318
Alignment:
| Q |
71 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
170 |
Q |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
171 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattcc |
270 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagagaacattctccccattcc |
36298 |
T |
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| Q |
271 |
ctatgttccaattagtatta |
290 |
Q |
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| T |
36299 |
caatattccaagtagaatta |
36318 |
T |
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