View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7365_low_6 (Length: 255)

Name: NF7365_low_6
Description: NF7365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7365_low_6
NF7365_low_6
[»] chr3 (11 HSPs)
chr3 (100-237)||(44883693-44883830)
chr3 (10-53)||(19241667-19241710)
chr3 (10-53)||(29375367-29375410)
chr3 (10-53)||(36881515-36881558)
chr3 (10-52)||(13365078-13365120)
chr3 (10-52)||(46694110-46694152)
chr3 (10-52)||(32834989-32835031)
chr3 (108-222)||(44913315-44913429)
chr3 (10-56)||(48820575-48820621)
chr3 (14-55)||(19912177-19912218)
chr3 (14-55)||(38806344-38806385)
[»] chr8 (11 HSPs)
chr8 (10-55)||(30999521-30999566)
chr8 (10-54)||(11646323-11646367)
chr8 (10-54)||(43275397-43275441)
chr8 (10-53)||(36068315-36068358)
chr8 (10-52)||(7147148-7147190)
chr8 (10-52)||(40058303-40058345)
chr8 (10-52)||(40918731-40918773)
chr8 (10-60)||(11174215-11174265)
chr8 (10-52)||(37345806-37345848)
chr8 (10-54)||(2539928-2539972)
chr8 (10-54)||(3585686-3585730)
[»] chr6 (10 HSPs)
chr6 (10-55)||(1605813-1605858)
chr6 (10-54)||(8626717-8626761)
chr6 (10-52)||(7761535-7761577)
chr6 (10-52)||(29260427-29260469)
chr6 (10-52)||(31559738-31559780)
chr6 (10-55)||(15064692-15064737)
chr6 (10-53)||(13757442-13757485)
chr6 (10-53)||(17942678-17942721)
chr6 (10-52)||(4129661-4129703)
chr6 (14-59)||(15064933-15064978)
[»] chr4 (14 HSPs)
chr4 (10-55)||(25704886-25704931)
chr4 (10-55)||(44569072-44569117)
chr4 (10-53)||(14261279-14261322)
chr4 (10-53)||(21310656-21310699)
chr4 (10-53)||(24706246-24706289)
chr4 (10-52)||(12071795-12071837)
chr4 (10-50)||(21661537-21661577)
chr4 (10-50)||(21670301-21670341)
chr4 (10-54)||(22321266-22321310)
chr4 (17-59)||(39295418-39295460)
chr4 (10-52)||(40122487-40122529)
chr4 (10-51)||(21064996-21065037)
chr4 (10-54)||(20249012-20249056)
chr4 (10-42)||(50768097-50768129)
[»] chr1 (9 HSPs)
chr1 (10-55)||(40783654-40783699)
chr1 (10-54)||(284568-284612)
chr1 (10-54)||(24771904-24771948)
chr1 (10-52)||(23045279-23045321)
chr1 (12-52)||(321863-321903)
chr1 (10-54)||(33082979-33083023)
chr1 (10-53)||(23526474-23526517)
chr1 (10-52)||(47037852-47037894)
chr1 (14-54)||(41959812-41959852)
[»] chr7 (6 HSPs)
chr7 (10-54)||(47110685-47110729)
chr7 (10-53)||(27814046-27814089)
chr7 (10-53)||(40349196-40349239)
chr7 (10-55)||(36453121-36453166)
chr7 (10-53)||(25614352-25614395)
chr7 (10-52)||(10981743-10981785)
[»] chr5 (9 HSPs)
chr5 (10-54)||(12806851-12806895)
chr5 (10-53)||(30720491-30720534)
chr5 (10-52)||(36561099-36561141)
chr5 (10-52)||(40886610-40886652)
chr5 (10-52)||(25683229-25683271)
chr5 (11-53)||(25773885-25773927)
chr5 (10-53)||(10285057-10285100)
chr5 (10-53)||(23097723-23097766)
chr5 (10-54)||(11319791-11319835)
[»] chr2 (9 HSPs)
chr2 (10-54)||(23367024-23367068)
chr2 (10-53)||(22388137-22388180)
chr2 (10-55)||(3519142-3519187)
chr2 (10-54)||(1102736-1102780)
chr2 (10-54)||(39938405-39938449)
chr2 (10-52)||(1646522-1646564)
chr2 (10-52)||(12969740-12969782)
chr2 (10-52)||(40756911-40756953)
chr2 (11-52)||(37673743-37673784)
[»] scaffold0054 (1 HSPs)
scaffold0054 (10-52)||(45688-45730)
[»] scaffold1770 (1 HSPs)
scaffold1770 (10-52)||(396-438)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 44883830 - 44883693
Alignment:
100 aaataatcacatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcacttcccagatttccttcaattctgcctcattaagtggatct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
44883830 aaataatcacatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcgcttcccagatttccttcaactctgcctcattaagtggatct 44883731  T
200 ccatcaatctccctcctcttagaaataacatttaaaag 237  Q
    ||||||||||||||||||||||||||||||||||||||    
44883730 ccatcaatctccctcctcttagaaataacatttaaaag 44883693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 19241710 - 19241667
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
19241710 attattctctaaaatggacaagtattatgaaacggagggagtat 19241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 29375367 - 29375410
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
29375367 attattctctaaaatggacaagtattatgaaacggagggagtat 29375410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36881515 - 36881558
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
36881515 attattctctaaaatggacaagtattatgaaacggagggagtat 36881558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13365078 - 13365120
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
13365078 attattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 46694152 - 46694110
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
46694152 attattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32835031 - 32834989
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
32835031 attattctctacaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 44913429 - 44913315
Alignment:
108 acatgtcaaagaatgttttgagcctagtatcatatctgtcgtcagaaatcacttcccagatttccttcaattctgcctcattaagtggatctccatcaat 207  Q
    ||||||||||||||||| ||||||||| |||| | || | |||||| |||   |||||||  |||||||||| || || ||||| || |||||||| |||    
44913429 acatgtcaaagaatgttctgagcctagaatcaaaactattgtcagatatctggtcccagaaatccttcaattgtggcttattaattgaatctccatgaat 44913330  T
208 ctccctcctcttaga 222  Q
     | ||||||| ||||    
44913329 attcctcctcctaga 44913315  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 48820575 - 48820621
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatttt 56  Q
    |||||| | ||||||||| ||||||||||||||||||| ||||||||    
48820575 attattttttaaaatggacaagtattatgaaacggaggaagtatttt 48820621  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 19912177 - 19912218
Alignment:
14 ttctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
19912177 ttctctaaaatggacatgtattttgaaacggagggagtattt 19912218  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 38806344 - 38806385
Alignment:
14 ttctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
38806344 ttctctaaaatggacatgtattttgaaacggagggagtattt 38806385  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 30999566 - 30999521
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
30999566 attattctctaaaatggacaagtattatgaaacggagggagtattt 30999521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 11646367 - 11646323
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
11646367 attattctctaaaatggacaagtattatgaaacggagggagtatt 11646323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 43275441 - 43275397
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
43275441 attattctctaaaatggacaagtattatgaaacggagggagtatt 43275397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 36068315 - 36068358
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
36068315 attattctctaaaatggacaagtattatgaaacggagggagtat 36068358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7147148 - 7147190
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
7147148 attattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40058345 - 40058303
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
40058345 attattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40918773 - 40918731
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
40918773 attattctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 11174265 - 11174215
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattttatag 60  Q
    |||||||| ||||||| | |||||||||||||||||||||||||| |||||    
11174265 attattctttaaaatgaacaagtattatgaaacggagggagtattgtatag 11174215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 37345806 - 37345848
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
37345806 attattctctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 2539972 - 2539928
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||    
2539972 attattctttaaaatggacaagtattatgaaacggaaggagtatt 2539928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3585686 - 3585730
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||    
3585686 attattctctaaaatagacaagtattatgaaacggatggagtatt 3585730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1605813 - 1605858
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
1605813 attattctctaaaatggacaagtattatgaaacggagggagtattt 1605858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 8626717 - 8626761
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
8626717 attattctctaaaatggacaagtattatgaaacggagggagtatt 8626761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7761535 - 7761577
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
7761535 attattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29260427 - 29260469
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
29260427 attattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 31559780 - 31559738
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
31559780 attattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 15064737 - 15064692
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||    
15064737 attattctccaaaatggacaagtattatgaaacggagggagtattt 15064692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 13757442 - 13757485
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
13757442 attattctctaaaatggacaagtattatgaaacggatggagtat 13757485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 17942678 - 17942721
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
17942678 attattctccaaaatggacaagtattatgaaacggagggagtat 17942721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 4129661 - 4129703
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
4129661 attattttctaaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 15064933 - 15064978
Alignment:
14 ttctctaaaatggataagtattatgaaacggagggagtattttata 59  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||    
15064933 ttctctaaaatggacatgtattttgaaacggagggagtattttata 15064978  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25704886 - 25704931
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
25704886 attattctctaaaatggacaagtattatgaaacggagggagtattt 25704931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 44569072 - 44569117
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
44569072 attattctctaaaatggacaagtattatgaaacggagggagtattt 44569117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 14261279 - 14261322
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
14261279 attattctctaaaatggacaagtattatgaaacggagggagtat 14261322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 21310656 - 21310699
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
21310656 attattctctaaaatggacaagtattatgaaacggagggagtat 21310699  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 24706289 - 24706246
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
24706289 attattctctaaaatggacaagtattatgaaacggagggagtat 24706246  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 12071795 - 12071837
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
12071795 attattctctaaaatggacaagtattatgaaacggagggagta 12071837  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21661577 - 21661537
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggag 50  Q
    |||||||||||||||||| ||||||||||||||||||||||    
21661577 attattctctaaaatggacaagtattatgaaacggagggag 21661537  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21670341 - 21670301
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggag 50  Q
    |||||||||||||||||| ||||||||||||||||||||||    
21670341 attattctctaaaatggacaagtattatgaaacggagggag 21670301  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 22321310 - 22321266
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
22321310 attattctctaaaatagacaagtattatgaaacggagggagtatt 22321266  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 39295418 - 39295460
Alignment:
17 tctaaaatggataagtattatgaaacggagggagtattttata 59  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
39295418 tctaaaatggacaagtattatgaaacggaaggagtattttata 39295460  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40122529 - 40122487
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
40122529 attattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21064996 - 21065037
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagt 51  Q
    |||||||||||||||| | |||||||||||||||||||||||    
21064996 attattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 20249056 - 20249012
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||    
20249056 attattctccaaaatggacaagtattatgaaacggagtgagtatt 20249012  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 50768097 - 50768129
Alignment:
10 attattctctaaaatggataagtattatgaaac 42  Q
    |||||||||||||||||| ||||||||||||||    
50768097 attattctctaaaatggacaagtattatgaaac 50768129  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40783699 - 40783654
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
40783699 attattctctaaaatggacaagtattatgaaacggagggagtattt 40783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 284568 - 284612
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
284568 attattctctaaaatggacaagtattatgaaacggagggagtatt 284612  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24771948 - 24771904
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
24771948 attattctctaaaatggacaagtattatgaaacggagggagtatt 24771904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23045321 - 23045279
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
23045321 attattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 321863 - 321903
Alignment:
12 tattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||| ||||||||||||||||||||||||    
321863 tattctctaaaatggacaagtattatgaaacggagggagta 321903  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 33082979 - 33083023
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
33082979 attattctttaaaatggacaagtattatgaaacggagggagtatt 33083023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 23526474 - 23526517
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    ||||||||  |||||||| |||||||||||||||||||||||||    
23526474 attattcttcaaaatggacaagtattatgaaacggagggagtat 23526517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 47037894 - 47037852
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||| |||||| || ||||||||||||||||||||||||    
47037894 attattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41959812 - 41959852
Alignment:
14 ttctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||| | ||||| ||||||||||||||||||    
41959812 ttctctaaaatggacatgtattttgaaacggagggagtatt 41959852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47110685 - 47110729
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
47110685 attattctctaaaatgaataagtattatgaaacggagggagtatt 47110729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27814046 - 27814089
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
27814046 attattctctaaaatggacaagtattatgaaacggagggagtat 27814089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 40349196 - 40349239
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
40349196 attattctctaaaatggacaagtattatgaaacggagggagtat 40349239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 36453166 - 36453121
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
36453166 attattctctaaaatggacaagtattatgaaacggagagagtattt 36453121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 25614395 - 25614352
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
25614395 attattctctaaaatggacaattattatgaaacggagggagtat 25614352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 10981743 - 10981785
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| || |||||||||| ||||||||||    
10981743 attattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 12806895 - 12806851
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
12806895 attattctctaaaatggacaagtattatgaaacggagggagtatt 12806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 30720534 - 30720491
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
30720534 attattctctaaaatggacaagtattatgaaacggagggagtat 30720491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 36561141 - 36561099
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
36561141 attattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40886652 - 40886610
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
40886652 attattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25683271 - 25683229
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
25683271 attattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 25773885 - 25773927
Alignment:
11 ttattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
25773885 ttattctctaaaatggacaagtattatgaaacggagagagtat 25773927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 10285100 - 10285057
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||| |||||| || |||||||||||||||||||||||||    
10285100 attattctttaaaatagacaagtattatgaaacggagggagtat 10285057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 23097766 - 23097723
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||    
23097766 attattctccaaaatggacaagtattatgaaacggaaggagtat 23097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 11319791 - 11319835
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    ||||||||||||||| || ||||||||||||||||| | ||||||    
11319791 attattctctaaaatagacaagtattatgaaacggatgaagtatt 11319835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 23367024 - 23367068
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
23367024 attattctctaaaatggacaagtattatgaaacggagggagtatt 23367068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 22388180 - 22388137
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtat 53  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
22388180 attattctctaaaatggacaagtattatgaaacggagggagtat 22388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 3519142 - 3519187
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtattt 55  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
3519142 attattctctaaaatggacaagtattatgaaacggaggaagtattt 3519187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 1102736 - 1102780
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
1102736 attattctctcaaatggacaagtattatgaaacggagggagtatt 1102780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 39938405 - 39938449
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagtatt 54  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
39938405 attattctctaaaatggacaagtattataaaacggagggagtatt 39938449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 1646522 - 1646564
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| | ||||||||||||||||||||||    
1646522 attattctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12969782 - 12969740
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
12969782 attattctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40756953 - 40756911
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
40756953 attattctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37673784 - 37673743
Alignment:
11 ttattctctaaaatggataagtattatgaaacggagggagta 52  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
37673784 ttattctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 45688 - 45730
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
45688 attattctctaaaatggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 396 - 438
Alignment:
10 attattctctaaaatggataagtattatgaaacggagggagta 52  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
396 attattttctaaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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