View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7365_low_7 (Length: 250)
Name: NF7365_low_7
Description: NF7365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7365_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 47849342 - 47849445
Alignment:
| Q |
13 |
attctacgtggcttctttagttgatcaatataggtcctacttggattgaccagggatccagggtggatgtaccttgacctactgaaggtcaaattgtgat |
112 |
Q |
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| T |
47849342 |
attctacgtggcttctttagttgctcaatataggtcctacttggactgaccagggatccagggtggatgtaccttgacctaatgaaggtcaaattgtgat |
47849441 |
T |
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| Q |
113 |
ttat |
116 |
Q |
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|||| |
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| T |
47849442 |
ttat |
47849445 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 47849602 - 47849651
Alignment:
| Q |
197 |
gacatctatttttagatacataataattacttgatgcctcaaacttagca |
246 |
Q |
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| T |
47849602 |
gacatctatttttagatacataataattacttgatgcctcaaacttagca |
47849651 |
T |
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