View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7366_low_1 (Length: 585)
Name: NF7366_low_1
Description: NF7366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7366_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 30 - 566
Target Start/End: Complemental strand, 3602540 - 3601996
Alignment:
| Q |
30 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3602540 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaat |
3602441 |
T |
|
| Q |
130 |
a---tattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgaga |
221 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
3602440 |
aatatattgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgaga |
3602341 |
T |
|
| Q |
222 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602340 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
3602241 |
T |
|
| Q |
322 |
gttagagaaattgcaaccttatttggaaaatggcaaagtgaaaccaatattggaccctaagagtccctttccattttctcagactgtggaagcattttcc |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3602240 |
attagagaaattgcaaccttatttggaaaatggcaaagtgaaaccaatattggaccctaagagtccctttccattttatcagactttggaagcattttcc |
3602141 |
T |
|
| Q |
422 |
tatctcaataccaatagagctattgggaaaatagttattcatcccattccatgagcttgaataagcaagctcgtaaatttcatggctttgaatttgtact |
521 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
3602140 |
tatctcaatactaatagagctattgggaaaatagttattcatcccattccatgagcatgaataatcaagctcataaatttcatggctttgaatttgtact |
3602041 |
T |
|
| Q |
522 |
attttggttactagaaagtgtatttgtgtgtttatgcagtaataa |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3602040 |
attttggttactagaaagtgtatttgtgtgtttatgcagtaataa |
3601996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 30 - 394
Target Start/End: Complemental strand, 3598380 - 3598011
Alignment:
| Q |
30 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
129 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3598380 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3598281 |
T |
|
| Q |
130 |
atattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
224 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3598280 |
atgttgtataatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagaggg |
3598181 |
T |
|
| Q |
225 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3598180 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgtt |
3598081 |
T |
|
| Q |
325 |
agagaaattgcaaccttatttggaaaatggcaaagtgaaaccaatattggaccctaagagtccctttcca |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
3598080 |
agagaaattgcaaccttatttggaaaatggcagagtgaggccaatattggaccctaagagtccctttcca |
3598011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 447
Target Start/End: Complemental strand, 3595155 - 3594733
Alignment:
| Q |
30 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
129 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
3595155 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3595056 |
T |
|
| Q |
130 |
atattgtattatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
224 |
Q |
| |
|
|| |||||| |||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3595055 |
atgttgtataatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagaggg |
3594956 |
T |
|
| Q |
225 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
324 |
Q |
| |
|
|| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3594955 |
cactgaaggctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgtt |
3594856 |
T |
|
| Q |
325 |
agagaaattgcaaccttatttggaaaatggcaaagtgaaaccaatattggaccctaagagtccctttccattttctcagactgtggaagcattttcctat |
424 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| || || |
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| T |
3594855 |
agagaaattgaaaccttacttggaaaatggcaaagtgaaaccaatattggactctaagagtccctttccattttctcatactttggaagcatttacccat |
3594756 |
T |
|
| Q |
425 |
ctcaataccaatagagctattgg |
447 |
Q |
| |
|
|| ||||| |||||||||||||| |
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| T |
3594755 |
cttaatacaaatagagctattgg |
3594733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 286 - 477
Target Start/End: Original strand, 3583585 - 3583776
Alignment:
| Q |
286 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaaccaatattggaccctaagagt |
385 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaaccaatattggaccctaagagt |
3583684 |
T |
|
| Q |
386 |
ccctttccattttctcagactgtggaagcattttcctatctcaataccaatagagctattgggaaaatagttattcatcccattccatgagc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| ||||||||||||||||| |
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|
| T |
3583685 |
ccctttccattttctcagactgtggaagcattttcctatctcaatacaaatagggttgttgggaaaatagttatacatcccattccatgagc |
3583776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 1440232 - 1440310
Alignment:
| Q |
379 |
taagagtccctttccattttctcagactgtggaagcattttcctatctcaataccaatagagctattgggaaaatagtt |
457 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||| |
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|
| T |
1440232 |
taagagtccatttccatttcctcagacagtggaagcattttcatatctcagtactaatagagctattgggaaaatagtt |
1440310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 12877009 - 12877079
Alignment:
| Q |
30 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
100 |
Q |
| |
|
|||||||| |||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
12877009 |
gattatacaaaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 475
Target Start/End: Original strand, 12877855 - 12877956
Alignment:
| Q |
374 |
gaccctaagagtccctttccattttctcagactgtggaagcattttcctatctcaataccaatagagctattgggaaaatagttattcatcccattccat |
473 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||| ||||||||||||||||| | || |||||||| ||| ||| | ||||| ||||||||||||| |
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|
| T |
12877855 |
gaccccaagagtccatttccattttctcaatctgttgaagcattttcctatctggaaactggtagagctactggaaaagttgttatccatcccattccat |
12877954 |
T |
|
| Q |
474 |
ga |
475 |
Q |
| |
|
|| |
|
|
| T |
12877955 |
ga |
12877956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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