View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7366_low_3 (Length: 409)
Name: NF7366_low_3
Description: NF7366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7366_low_3 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 47 - 409
Target Start/End: Complemental strand, 3584091 - 3583709
Alignment:
| Q |
47 |
tgaataaagcatgttattgtgacgaaaaaccaaccctatatatttccatgatatcatcatgtaggtcattgagcttttacttttataacctttccatgaa |
146 |
Q |
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| T |
3584091 |
tgaataaagcatgttattgtgactaaaaaccaaccctat----ttccatgatatcatcatgtaggtcattgagcttttacttttataacctttccatgaa |
3583996 |
T |
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| Q |
147 |
ctattcctttgtgacatgcttattttggtataagtctaacttgaacaatacacatgcatg-catttca-nnnnnnnccctcggattagtcggtcttcagg |
244 |
Q |
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| T |
3583995 |
ctattcctttgtgacatgcttattttggtataagtctaacttgaacaatacacatgcatgtgatttcattttttttcctttggattagtcggtccttagg |
3583896 |
T |
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| Q |
245 |
tgagataccaagttttcaaa----------------------ataaaaaacatatcatagagatttattcatacataaacacacaaatacacatggaatt |
322 |
Q |
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| T |
3583895 |
tgagataccgagttttcaaaagaaaaaatatatagatataaaataacaaacatatcttagagatttattcatacataaacacacaaatacacatggaatt |
3583796 |
T |
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| Q |
323 |
gatgtgcctaattagccatgctcatggaatgggatgtataactattttcccaacagccctatttgtattgagataggaaaatgcttc |
409 |
Q |
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| T |
3583795 |
gatgtgcctaattagccatgctcatggaatgggatgtataactattttcccaacaaccctatttgtattgagataggaaaatgcttc |
3583709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 3602082 - 3602152
Alignment:
| Q |
339 |
catgctcatggaatgggatgtataactattttcccaacagccctatttgtattgagataggaaaatgcttc |
409 |
Q |
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| T |
3602082 |
catgctcatggaatgggatgaataactattttcccaatagctctattagtattgagataggaaaatgcttc |
3602152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 1440315 - 1440263
Alignment:
| Q |
357 |
tgtataactattttcccaacagccctatttgtattgagataggaaaatgcttc |
409 |
Q |
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|||| |||||||||||||| ||| ||||| ||| ||||||| ||||||||||| |
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| T |
1440315 |
tgtacaactattttcccaatagctctattagtactgagatatgaaaatgcttc |
1440263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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