View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7366_low_8 (Length: 278)
Name: NF7366_low_8
Description: NF7366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7366_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 31837118 - 31836867
Alignment:
| Q |
9 |
cattattctttttaggtataaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgc |
108 |
Q |
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| T |
31837118 |
catttttctttttaggtataaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgc |
31837019 |
T |
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| Q |
109 |
tgcaatacatgcagcatttgctctttcatattattcttattcaacaaattcttatctttaagtaactcttcattatctaccacttaaatgtgaaaattta |
208 |
Q |
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| T |
31837018 |
tgcaatacatgcagcatttgctctttcatattattcttattcaacaaattcttatctttaagtaactcttcattatctaccacttaaatgtgaaaattta |
31836919 |
T |
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| Q |
209 |
ataatataatgagatatagaggcatgttgaatatgttgaaccatgtaattac |
260 |
Q |
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| T |
31836918 |
ataatataatgagatatagaggcatgttgaatatgttgaaccatgtaattac |
31836867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 26265965 - 26266165
Alignment:
| Q |
20 |
ttaggtataaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaatacatg |
119 |
Q |
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||||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
26265965 |
ttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttccaattggtgctgcgatacatg |
26266064 |
T |
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| Q |
120 |
cagcatttgctctttcatattattcttattcaacaaattcttatctttaagtaactc------ttcattatctaccacttaaatgtgaaaatttaataat |
213 |
Q |
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| T |
26266065 |
cagcatttgctctttcatatcattcacattcaacaatttcttatcttt-agtaactcttaaatttaattatctaccacttatatgtgaacaattaataat |
26266163 |
T |
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| Q |
214 |
at |
215 |
Q |
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|| |
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| T |
26266164 |
at |
26266165 |
T |
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