View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7366_low_9 (Length: 276)

Name: NF7366_low_9
Description: NF7366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7366_low_9
NF7366_low_9
[»] chr3 (12 HSPs)
chr3 (15-259)||(10868009-10868258)
chr3 (15-100)||(21740008-21740093)
chr3 (15-100)||(14863950-14864035)
chr3 (94-186)||(21740206-21740298)
chr3 (15-100)||(15481243-15481328)
chr3 (15-100)||(36709480-36709565)
chr3 (15-100)||(45684746-45684831)
chr3 (20-92)||(24926178-24926250)
chr3 (15-100)||(42674924-42675009)
chr3 (198-259)||(20197883-20197949)
chr3 (103-175)||(14866262-14866334)
chr3 (15-87)||(40513209-40513281)
[»] chr7 (13 HSPs)
chr7 (94-259)||(31025186-31025356)
chr7 (94-259)||(47105293-47105463)
chr7 (94-258)||(13553867-13554036)
chr7 (94-246)||(19728792-19728944)
chr7 (19-93)||(13553673-13553747)
chr7 (15-100)||(19735088-19735173)
chr7 (15-100)||(18671740-18671825)
chr7 (15-100)||(5327333-5327418)
chr7 (15-100)||(36227635-36227720)
chr7 (15-100)||(41340103-41340188)
chr7 (15-93)||(45993152-45993230)
chr7 (15-100)||(17856299-17856384)
chr7 (15-100)||(18767978-18768063)
[»] chr1 (11 HSPs)
chr1 (94-238)||(17827613-17827757)
chr1 (94-246)||(20795973-20796125)
chr1 (94-259)||(39430565-39430734)
chr1 (94-259)||(49264647-49264817)
chr1 (15-100)||(39430847-39430932)
chr1 (15-93)||(20796234-20796312)
chr1 (15-93)||(49264449-49264527)
chr1 (51-96)||(17827856-17827901)
chr1 (15-93)||(25504479-25504557)
chr1 (15-99)||(32352795-32352879)
chr1 (15-87)||(13867318-13867390)
[»] chr8 (10 HSPs)
chr8 (94-238)||(43253408-43253552)
chr8 (15-93)||(24794323-24794401)
chr8 (15-100)||(11393833-11393918)
chr8 (15-93)||(43249289-43249367)
chr8 (94-259)||(24794044-24794214)
chr8 (94-232)||(11394031-11394169)
chr8 (15-100)||(44082497-44082582)
chr8 (15-93)||(4987550-4987628)
chr8 (19-100)||(6901479-6901559)
chr8 (15-100)||(23942657-23942742)
[»] chr2 (8 HSPs)
chr2 (110-259)||(11234178-11234332)
chr2 (94-259)||(9668689-9668859)
chr2 (94-215)||(10598043-10598164)
chr2 (15-93)||(11233975-11234053)
chr2 (15-93)||(9668491-9668569)
chr2 (15-92)||(36804697-36804774)
chr2 (15-100)||(28400035-28400120)
chr2 (15-100)||(35488407-35488492)
[»] chr6 (9 HSPs)
chr6 (94-230)||(13085860-13085996)
chr6 (15-93)||(13086116-13086194)
chr6 (15-100)||(11469138-11469223)
chr6 (15-100)||(23065531-23065616)
chr6 (15-93)||(19256217-19256295)
chr6 (15-93)||(33640494-33640572)
chr6 (20-100)||(4478561-4478641)
chr6 (15-93)||(503017-503095)
chr6 (15-100)||(33805350-33805435)
[»] chr4 (11 HSPs)
chr4 (94-259)||(42953177-42953347)
chr4 (15-93)||(42952990-42953068)
chr4 (15-93)||(8935651-8935729)
chr4 (15-93)||(19648279-19648357)
chr4 (15-93)||(23657874-23657952)
chr4 (18-100)||(53810411-53810493)
chr4 (15-100)||(19115006-19115091)
chr4 (15-100)||(26694498-26694583)
chr4 (15-99)||(7662793-7662877)
chr4 (15-63)||(12726911-12726959)
chr4 (15-99)||(23872961-23873045)
[»] chr5 (9 HSPs)
chr5 (94-259)||(19513148-19513318)
chr5 (15-100)||(19512950-19513035)
chr5 (23-93)||(22094743-22094813)
chr5 (15-66)||(26262361-26262412)
chr5 (15-100)||(6866934-6867019)
chr5 (15-92)||(26262916-26262993)
chr5 (17-70)||(31864389-31864442)
chr5 (15-100)||(38358037-38358122)
chr5 (15-99)||(35122191-35122275)
[»] scaffold0308 (1 HSPs)
scaffold0308 (15-100)||(17715-17800)
[»] scaffold0418 (1 HSPs)
scaffold0418 (15-99)||(8175-8259)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 10868258 - 10868009
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgggtgatgggattgata 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  10868258 taggtaaatggtgttggaggatgttggtagatagagtaggtttctgatatagtgttctagtcgctcgttatggcaaggtaggtgggtgatgggactgata 10868159  T
Q  115 cattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtagacaagtatattaatgtggctaa 214  Q
    | |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||    
T  10868158 cgttgttttggtatcactggtggtgtgaaggggagccccttagagagcagttttcgaggttgtttgatttagttgtaaacaaatatattactgtggctaa 10868059  T
Q  215 catgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    |||||| |||||||| |||||||     | ||||||||||||||||||||    
T  10868058 catgttgtccgtgagattgtcgcggggtggggaggggtggagttggaggc 10868009  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 21740008 - 21740093
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||    
T  21740008 taggtaaatggtgttggaggatgttggtagatagagtaggtttatggtattgtgttctagtcgcccgttatggcgaagtaggtggg 21740093  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 14863950 - 14864035
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| |||||  ||||||||||||| ||||||    
T  14863950 taggtaaatggtgttggaggatgttggtcgataaagtaggtttatggtatagtgttcttgtcgcctgttatggcgaggtgggtggg 14864035  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 21740206 - 21740298
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttag 186  Q
    |||||||||||| || || ||| ||||||||| | || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  21740206 aggtgggtgatgagactggtacgttgttttggcagcattggtggtgtggaggggcgcctcttagagagcagtttccgaggttgtttgatttag 21740298  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 15481243 - 15481328
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || || |||| ||| || ||||||  |||||||||||| ||||||||| | |||||||||    
T  15481243 taggtaaatggtgttggaggatgttagttgacagagaagggttgtggtatcatgttctagtcgcccgttatggcaaagtaggtggg 15481328  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 36709565 - 36709480
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || || |||| ||| || ||||||  |||| ||||||| ||||||||||| |||||||||    
T  36709565 taggtaaatggtgttggaggatgttagttgacagagaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtggg 36709480  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 45684831 - 45684746
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| |||  | ||||||   ||| ||||||||||||||||||| |||||||||    
T  45684831 taggtaaatggtgttggaggatgttagtcgatagagaagggctgtggtatcaggttttagtcgctcgttatggcgaagtaggtggg 45684746  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 24926178 - 24926250
Alignment:
Q  20 aaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgagg 92  Q
    ||||||||||| |||||||| || ||||||| |||||| |||||| ||||| ||||||| ||||||| |||||    
T  24926178 aaatggtgttggaggatgttagtggatagagaaggtttgtggtatcgtgttttagtcgcccgttatgacgagg 24926250  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 42674924 - 42675009
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| ||| || ||||||   ||| ||||||| ||||||||||| |||| ||||    
T  42674924 taggtaaatggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcgaagtagatggg 42675009  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 20197883 - 20197949
Alignment:
Q  198 tatattaatgtggctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    ||||||||||||||||||||||| ||| |||||||| |||     | ||||||||||||||||||||    
T  20197883 tatattaatgtggctaacatgttgtccttgaggttgacgcggggtggggaggggtggagttggaggc 20197949  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 14866262 - 14866334
Alignment:
Q  103 atgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggtt 175  Q
    |||||| |||||||||||||||  |||||||||| ||||| |  | ||| |||||||||  ||||||||||||    
T  14866262 atgggactgatacattgttttgacatcactggtggtgtggcgaagcgcctcttagagagttgtttccgaggtt 14866334  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 40513209 - 40513281
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatgg 87  Q
    ||||||||||||||||  |||||||||| |||||||  ||||| |||||||| || || || ||||| |||||    
T  40513209 taggtaaatggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatgg 40513281  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 31025186 - 31025356
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||| | |||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  31025186 aggtgggtgatggtactgatacgttgttttggtttcactggtgatgtggaggggcgcctcttagagagcagtttcccaggttgtttgatttagttgtaga 31025285  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    ||| ||||||| ||||||||||||||| ||| |||||||| |||     | ||||||||||||||||||||    
T  31025286 caaatatattactgtggctaacatgttgtccttgaggttgacgcagggtggggaggggtggagttggaggc 31025356  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 47105293 - 47105463
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   |||||| ||||||||||  |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  47105293 aggtgggtgatggttctgatacgttgttttggttccactggtggtgtggaggggcgccccttagagagcagtttcccaggttgtttgatttagctgtaga 47105392  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcgag-----gaggggtggagttggaggc 259  Q
    ||| |||| || ||| |||||||||||  || |||| |||||||| |     |||||||||||||||||||    
T  47105393 caaatatactactgtagctaacatgttgcccttgagattgtcgcggggtggtgaggggtggagttggaggc 47105463  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 13553867 - 13554036
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||  || |||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||    
T  13553867 aggtgggtgatggttttcatacgttgttttggtttcactggtggtgtggaggggcgccccttagagagcagtttcccaggttgttcgatttagctgtaga 13553966  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggagg 258  Q
    ||| |||| || ||| ||||||||| |  || ||||||||||||     | |||||||||||||||||||    
T  13553967 caaatatactactgtagctaacatgctacccttgaggttgtcgcggggtggggaggggtggagttggagg 13554036  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 19728944 - 19728792
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||||| |||||| ||||||||| |||||||||| ||||| || | ||| |||||||||  ||||||||||||||||| ||||| |||  |    
T  19728944 aggtgggtgatgggactgatacgttgttttggcatcactggtggtgtggcggagcgcctcttagagagttgtttccgaggttgtttggtttagctgtgaa 19728845  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcgaggagggg 246  Q
    |||   ||||  ||| ||||||||||||||| ||||||||| |||||| ||||    
T  19728844 caaagttatttctgtagctaacatgttttccttgaggttgttgcgaggtgggg 19728792  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 13553673 - 13553747
Alignment:
Q  19 taaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  13553673 taaatggtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggt 13553747  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 19735173 - 19735088
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| | |||||| ||||||| ||||||    
T  19735173 taggtaaatggtgttggaggatgttggtcgatagagtaggtttgtggtatagtgttcttgtcacccgttatagcgaggttggtggg 19735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 18671825 - 18671740
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| ||| || ||||||  |||| ||||||||||||||||||| |||||||||    
T  18671825 taggtaaatggtgttggaggatgttagttgatagagcagggttgtggtatcatgttttagtcgctcgttatggcgaagtaggtggg 18671740  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 5327418 - 5327333
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| ||||||||||| |||||||| || ||||||| |||||| |||||   |||| ||||||| || ||||||||||||||||||    
T  5327418 tagggaaatggtgttggaggatgttagtggatagagaaggtttatggtaccatgttttagtcgcccgatatggcgaggtaggtggg 5327333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 36227635 - 36227720
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    ||||||| |||| ||| |||||||| || ||||||| |||||| ||||| | |||||||||||| || |||||||| |||||||||    
T  36227635 taggtaagtggtattggaggatgttagttgatagagaaggtttatggtacaatgttctagtcgcgcggtatggcgaagtaggtggg 36227720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 41340188 - 41340103
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| ||||||||||| |||||||| || ||||||| |||||| |||||   |||| ||||||| || ||||||||||||||||||    
T  41340188 tagggaaatggtgttggaggatgttagtggatagagaaggtttgtggtaccatgttttagtcgcccgatatggcgaggtaggtggg 41340103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 45993230 - 45993152
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||| ||||||||||||||    
T  45993230 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggt 45993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17856384 - 17856299
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| ||||||||||| |||||||| || ||||||| ||| || ||||||  |||| ||||||| |||||||||||  ||||||||    
T  17856384 tagggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcgaaataggtggg 17856299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 18768063 - 18767978
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| ||| || ||||||   ||| ||||| | ||||||||| | |||||||||    
T  18768063 taggtaaatggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtctcccgttatggcaaagtaggtggg 18767978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 17827757 - 17827613
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||    
T  17827757 aggtgggtgatgggactgatacgttgttttggtatcactggtggtgtggaggggcgcctcttagaaagcagtttccgaggttgtttgatttagctgtaga 17827658  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcg 238  Q
    ||| ||||||| ||||||||||||||| ||| |||||||| ||||    
T  17827657 caaatatattactgtggctaacatgttatccttgaggttgacgcg 17827613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 20796125 - 20795973
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   |||||| |||||||||| ||||||||| |||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||    
T  20796125 aggtgggtgatggttctgatacgttgttttggtttcactggtggtgtggaggggcgccccttagagagcaatttcccaggttgttcgatttagttgtaga 20796026  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcgaggagggg 246  Q
    ||| |||| || ||| ||||||||||| ||| |||||||| |||| |||||||    
T  20796025 caaatatactattgtagctaacatgttgtccttgaggttgacgcggggagggg 20795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 259
Target Start/End: Complemental strand, 39430734 - 39430565
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   |||||| |||||| |||  |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  39430734 aggtgggtgatggttctgatacgttgttt-ggttccactggtggtgtggaggggcgccccttagagagcagtttcccaggttgtttgatttagctgtaga 39430636  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcgag-----gaggggtggagttggaggc 259  Q
    ||| |||| || ||| |||||||||||  || ||||||||||||| |     |||||||||||||||||||    
T  39430635 caaatatactactgtagctaacatgttgcccttgaggttgtcgcggggtggtgaggggtggagttggaggc 39430565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 49264647 - 49264817
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   ||||||  ||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| |||||||| ||||||| ||||||    
T  49264647 aggtgggtgatggttctgatacgctgttttggtttcactggtggtgtggcggggcgccccttagagagcagtttcccaggttgttcgatttagctgtaga 49264746  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    ||| |||| |  ||| |||||||||||  || ||||||||||||     | ||||||||||||||||||||    
T  49264747 caaatatactcctgtagctaacatgttgcccttgaggttgtcgcggggtggggaggggtggagttggaggc 49264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 39430932 - 39430847
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    ||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||    
T  39430932 taggtaagtggtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggtggg 39430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 20796312 - 20796234
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| |||||||||||| |||||||||| || ||||||| |||||||||||| ||||||||||||||    
T  20796312 taggtaaatggtgttggaggatgttggtaaatagagtagggttgtggtataatgttctagtcgcccgttatggcgaggt 20796234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 49264449 - 49264527
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| | ||||||||||||||||||||| || |||| ||||||| ||||||| ||||||||||||||    
T  49264449 taggtaaatggtgttggaagatgttggtagatagagtagggttgtggtgtagtgttatagtcgcccgttatggcgaggt 49264527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 17827901 - 17827856
Alignment:
Q  51 taggtttctggtatagtgttctagtcgctcgttatggcgaggtagg 96  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  17827901 taggtttgtggtatagtgttctagtcgcccgttatggcgaggtagg 17827856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 25504479 - 25504557
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||| ||||||||||||||    
T  25504479 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggt 25504557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 32352795 - 32352879
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgg 99  Q
    |||| |||||||||||  |||||||||| |||||||  ||||| |||||||| ||| |||||||| | ||||||||  |||||||    
T  32352795 taggaaaatggtgttggcggatgttggtggatagaggtggtttgtggtatagggttttagtcgctaggtatggcgaattaggtgg 32352879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 13867318 - 13867390
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatgg 87  Q
    ||||||||||||||||  |||||||||| |||||||  ||||| |||||||| || || || ||||| |||||    
T  13867318 taggtaaatggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatgg 13867390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 43253408 - 43253552
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||| | |||||| |||||||||| ||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||| ||||||    
T  43253408 aggtgggtgatggtactgatacgttgttttggtttcactggtgatgtggagaggcgcctcttagagagcagtttcccaggttgtttgatttagctgtaga 43253507  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcg 238  Q
     || ||||||| ||||||||||||||| ||| |||||||| ||||    
T  43253508 aaaatatattactgtggctaacatgttgtccttgaggttggcgcg 43253552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 24794401 - 24794323
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  24794401 taggtaaatggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttcttgtcgcccgttatggcgaggt 24794323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 11393833 - 11393918
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||    
T  11393833 taggtaaatggtgttggaggttgttggtcgatagagtaggtttgtggtatagtgttcttgtcgcccgttatggcgaggttggtggg 11393918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 43249289 - 43249367
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| || |||||||||||    
T  43249289 taggtaaatggtgttggaggatattggtagatagagtagggttgtggtatagtgttctagtcgcccgctatggcgaggt 43249367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 259
Target Start/End: Complemental strand, 24794214 - 24794044
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||| |||||||  ||||| ||||||||| | |||||||| |||||  | | ||| |||||||||  ||||||||||||||||||||||| | |  |    
T  24794214 aggtgggcgatgggaccgatacgttgttttggcagcactggtggtgtggccgagcgcctcttagagagttgtttccgaggttgtttgatttagctatgaa 24794115  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcga-----ggaggggtggagttggaggc 259  Q
    |||  |||||  ||| ||||||||||||||| ||||||||| ||||     ||||||||||||||||||||    
T  24794114 caaagatatttctgtagctaacatgttttccttgaggttgttgcgaggtggggaggggtggagttggaggc 24794044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 11394031 - 11394169
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||||| |||||| | ||||||| | |||| ||| |||||  | | ||| |||||||||  ||||||||||||||||||||||| |||  |    
T  11394031 aggtgggtgatgggactgatacgtggttttggcagcactagtggtgtggcagagcgcctcttagagagttgtttccgaggttgtttgatttagctgtgaa 11394130  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggtt 232  Q
    |||  |||||  ||| ||||||||||||||| |||||||    
T  11394131 caaagatatttctgtagctaacatgttttccttgaggtt 11394169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 44082497 - 44082582
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| ||| || ||||||   ||| ||||||| ||||||||||| |||||||||    
T  44082497 taggtaaatggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcgaagtaggtggg 44082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 4987550 - 4987628
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||| | |  ||||| |||||||| ||| ||||||| ||||||||||||||    
T  4987550 tagggaaatggtgttggaggatgttagtggatgggggtggtttttggtatagagttttagtcgcccgttatggcgaggt 4987628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 6901559 - 6901479
Alignment:
Q  19 taaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||| |||||||| |  |||| |  |||||| ||||||  |||| ||||||| |||||||||||||||||||||    
T  6901559 taaatggtgttgtaggatgttagg-gataaacaaggtttgtggtatcatgttttagtcgcccgttatggcgaggtaggtggg 6901479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 23942742 - 23942657
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||| |||| || ||||||| ||| || ||||||  |||| ||||||| |||| || ||| |||||||||    
T  23942742 taggtaaatggtgttggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgttgtgacgaagtaggtggg 23942657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 11234178 - 11234332
Alignment:
Q  110 tgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtagacaagtatattaatgtg 209  Q
    |||||| |||||||||| ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  11234178 tgatacgttgttttggtttcactggtggtgtggaggggcgcctcttagagagcagtttcccaggttgtttgatttagctgtagacaaatatattattgtg 11234277  T
Q  210 gctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    ||||||||||| ||| |||||||| |||     | ||||||||||||||||||||    
T  11234278 gctaacatgttgtccttgaggttgacgcagggtggggaggggtggagttggaggc 11234332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 9668689 - 9668859
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   |||||| |||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| |||||||| ||||||| ||||||    
T  9668689 aggtgggtgatggttctgatacgttgttttggtttcactggtggtgtggcggggcgccccttagagagcagtttcccaggttgttcgatttagctgtaga 9668788  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgc-----gaggaggggtggagttggaggc 259  Q
    ||| |||| || |||||||||||||||  || ||||||||||||     | ||||||||||||||||||||    
T  9668789 caaatatactactgtggctaacatgttgcccttgaggttgtcgcggggtggggaggggtggagttggaggc 9668859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 10598164 - 10598043
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    |||||||||||||   |||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||    
T  10598164 aggtgggtgatggttctgatacgttgttttggtttcactggtggtgtggaggggcgccccttagagagcagtttcccaggttgttcgatttagctgtaga 10598065  T
Q  194 caagtatattaatgtggctaac 215  Q
    ||| ||||||| ||| ||||||    
T  10598064 caaatatattactgttgctaac 10598043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 11233975 - 11234053
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11233975 taggtaaatggtgttggacgatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggt 11234053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 9668491 - 9668569
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    ||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  9668491 taggtaaatagtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggt 9668569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 36804774 - 36804697
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgagg 92  Q
    |||| ||||||||||| |||||||| ||||| |||| |||||| |||||| ||||| ||||||| |||||||||||||    
T  36804774 taggaaaatggtgttggaggatgttagtagagagagaaggtttgtggtatcgtgttttagtcgcccgttatggcgagg 36804697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 28400035 - 28400120
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| |||  | ||||||   ||| ||||||||||||||||||| |||||||||    
T  28400035 taggtaaatggtgttggaggatgttagtcgatagagaagggatgtggtatcaggttttagtcgctcgttatggcgaagtaggtggg 28400120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 35488492 - 35488407
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||| |||| || ||||||| ||| || ||||||  |||| ||||||| ||||||||||| |||||||||    
T  35488492 taggtaaatggtgttggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtggg 35488407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 13085996 - 13085860
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||| | |||||| |||||||||| ||| ||||| |||||||||| ||| |||||||||| |||||| |||||||||||||||| ||||||    
T  13085996 aggtgggtgatggtactgatacgttgttttggtttcattggtggtgtggaggggcgcctcttagagagctgtttcccaggttgtttgatttagctgtaga 13085897  T
Q  194 caagtatattaatgtggctaacatgttttccgtgagg 230  Q
    ||| ||||||  | ||||||||||||| || ||||||    
T  13085896 caaatatatttctatggctaacatgttgtctgtgagg 13085860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 13086194 - 13086116
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  13086194 taggtaaatggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggt 13086116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 11469223 - 11469138
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||||||||||| || ||| || |||||| ||||  ||||||| || ||||| || |||||||||    
T  11469223 taggtaaatggtgttggaggatgttggtagataaagaagggttgtggtatcgtgtgttagtcgcccgatatggtgacgtaggtggg 11469138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 23065531 - 23065616
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||  ||| |||| || ||||||| |||||| ||||||  |||| ||||||| ||||||||||| |||||||||    
T  23065531 taggtaaatggtgttagaggttgttagttgatagagaaggtttgtggtatcatgttttagtcgcccgttatggcgaagtaggtggg 23065616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 19256295 - 19256217
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||| ||||||||||||||    
T  19256295 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggt 19256217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 33640572 - 33640494
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||| ||||||||||||||    
T  33640572 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggt 33640494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4478641 - 4478561
Alignment:
Q  20 aaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    ||||||||||| |||||||| || ||||| | ||| || ||||||  |||| ||||||| ||||||||||| |||||||||    
T  4478641 aaatggtgttggaggatgttagtggatagggaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtggg 4478561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 503017 - 503095
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| || ||||| ||| ||||||| ||||||||||||||    
T  503017 tagggaaatggtgttggaggatgttagtggataggggtggtttttgatatagagttttagtcgcccgttatggcgaggt 503095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 33805435 - 33805350
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| ||||||||||| |||||||| || ||||||| ||| || ||||||  |||| ||||||| || ||||||||  ||||||||    
T  33805435 tagggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgctatggcgaaataggtggg 33805350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 42953177 - 42953347
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||||||||||| |||||| ||||||||| | |||||||| |||||||| | ||| |||||||||  ||||||||||||||||||||||| |||  |    
T  42953177 aggtgggtgatgggactgatacgttgttttggcagcactggtggtgtggaggagtgcctcttagagagttgtttccgaggttgtttgatttagctgtgaa 42953276  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcga-----ggaggggtggagttggaggc 259  Q
    |||  |||||  ||| ||||||||||||||| || |||||| ||||     ||||||||||||||||||||    
T  42953277 caaagatatttctgtagctaacatgttttccttggggttgttgcgaggtggggaggggtggagttggaggc 42953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 42952990 - 42953068
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  42952990 taggtaaatggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttcttgtcgcccgttatggcgaggt 42953068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8935729 - 8935651
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||||||||||||||||||    
T  8935729 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgctcgttatggcgaggt 8935651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 19648357 - 19648279
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| |||||||  |||||||||||||    
T  19648357 tagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcctgttatggcgaggt 19648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 23657952 - 23657874
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||| ||||||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||| |||||| |||||||    
T  23657952 tagggaaatggtgttgaaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatagcgaggt 23657874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 53810493 - 53810411
Alignment:
Q  18 gtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    ||||||||||||| |||||||| || ||||||| |||||| |||||   |||| ||||||   |||||||||| |||||||||    
T  53810493 gtaaatggtgttggaggatgttagtcgatagagaaggtttgtggtaccatgttttagtcgtctgttatggcgaagtaggtggg 53810411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 19115091 - 19115006
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| ||||||||||| ||| |||| || ||||| |  || || |||||||| ||| ||||||||||||||||||| ||| |||||    
T  19115091 tagggaaatggtgttggaggttgttagtggataggggtggattttggtatagagttttagtcgctcgttatggcgaagtatgtggg 19115006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 26694583 - 26694498
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||||||| ||  |||||   ||| ||||||  ||||||||||| |||| ||||    
T  26694583 taggtaaatggtgttggaggatgttagtggatagagtagggttgcggtatcaggttttagtcgtccgttatggcgaagtagatggg 26694498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 7662793 - 7662877
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgg 99  Q
    ||||||||||||||||  |||||||||| || ||||  ||||| |||||||||||  |||| ||| | ||||||||  |||||||    
T  7662793 taggtaaatggtgttggcggatgttggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtgg 7662877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 12726959 - 12726911
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggta 63  Q
    ||||||||||||| || |||||||||||||||||||  ||||| |||||    
T  12726959 taggtaaatggtgctggaggatgttggtagatagagagggtttttggta 12726911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 23872961 - 23873045
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgg 99  Q
    |||| |||||||||||  ||||||||||||||||||  ||||| |||||| | ||| |||||||  | ||||||||  |||||||    
T  23872961 taggaaaatggtgttggcggatgttggtagatagaggtggtttgtggtatcgggttttagtcgccaggtatggcgaattaggtgg 23873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 19513148 - 19513318
Alignment:
Q  94 aggtgggtgatgggattgatacattgttttggtatcactggtgatgtggaggggagccccttagagagcagtttccgaggttgtttgatttagttgtaga 193  Q
    ||||||| ||||||| |||||| ||||||||| | |||||||  ||||| || | ||| |||||||||  |||| ||||||||||||||||||||||  |    
T  19513148 aggtgggcgatgggaatgatacgttgttttggcagcactggtagtgtggcggagcgcctcttagagagttgttttcgaggttgtttgatttagttgtgaa 19513247  T
Q  194 caagtatattaatgtggctaacatgttttccgtgaggttgtcgcga-----ggaggggtggagttggaggc 259  Q
    |||  |||||  ||| ||||||||||||||| ||||||||| ||||     ||||||||||||||||||||    
T  19513248 caaagatatttctgtagctaacatgttttccttgaggttgttgcgaggtggggaggggtggagttggaggc 19513318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 19512950 - 19513035
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| ||||| |||||||||||||| ||||||    
T  19512950 taggtaaatggtgttggaggatgttggtcgataaagtaggtttgtggtatagtgttcttgtcgcccgttatggcgaggttggtggg 19513035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 22094743 - 22094813
Alignment:
Q  23 tggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggt 93  Q
    |||||||| |||||||| || ||||| |  ||||| |||||||| ||| ||||||||||||||||||||||    
T  22094743 tggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgctcgttatggcgaggt 22094813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26262361 - 26262412
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatag 66  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  26262361 taggaaaatggtgttggaggatgttagtaaatagagtaggtttttggtatag 26262412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 6867019 - 6866934
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||| | |||||||| ||  |||||| ||  || ||||||  |||| ||||||| ||||||||||| |||||||||    
T  6867019 taggtaaatggtgtcggaggatgttagtttatagagaagagttgtggtatcatgttttagtcgcccgttatggcgaagtaggtggg 6866934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 26262916 - 26262993
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgagg 92  Q
    |||| ||||||| ||| |||||||| ||| ||||||||||||| | |||||| ||  |||| ||||||||||| ||||    
T  26262916 taggaaaatggtattggaggatgttagtaaatagagtaggttttttgtatagggtgttagttgctcgttatggtgagg 26262993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 31864442 - 31864389
Alignment:
Q  17 ggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgtt 70  Q
    |||||||||||||| |||||||| || ||||||| ||| || ||||||||||||    
T  31864442 ggtaaatggtgttggaggatgttagtggatagaggaggcttatggtatagtgtt 31864389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 38358122 - 38358037
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||||||||||||||| |||||||| || ||||||| ||  || ||||||    || ||||||| ||||||||||| |||||||||    
T  38358122 taggtaaatggtgttggaggatgttagttgatagagaagagttgtggtatcagattttagtcgcccgttatggcgaagtaggtggg 38358037  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 35122191 - 35122275
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgg 99  Q
    |||| ||||||||||| |||||||| || ||||||| ||| || ||||||   ||| ||||||| |||||||||||  |||||||    
T  35122191 tagggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcaggttttagtcgcccgttatggcgaaataggtgg 35122275  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17800 - 17715
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtggg 100  Q
    |||| |||||||||||  ||||||| || ||||||| ||| || ||||||  |||| ||||||| |||||||||||  ||||||||    
T  17800 tagggaaatggtgttggtggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcgaaataggtggg 17715  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 8259 - 8175
Alignment:
Q  15 taggtaaatggtgttgcaggatgttggtagatagagtaggtttctggtatagtgttctagtcgctcgttatggcgaggtaggtgg 99  Q
    ||||||||||||||||  |||||||||| || ||||  ||||| |||||||||||  |||| ||| | ||||||||  |||||||    
T  8259 taggtaaatggtgttggcggatgttggtggacagaggtggtttgtggtatagtgtcttagttgctaggtatggcgaattaggtgg 8175  T

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