View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7367_high_1 (Length: 350)

Name: NF7367_high_1
Description: NF7367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7367_high_1
NF7367_high_1
[»] chr1 (6 HSPs)
chr1 (12-336)||(38709717-38710041)
chr1 (12-324)||(4391386-4391696)
chr1 (84-214)||(39908886-39909016)
chr1 (12-77)||(4397462-4397527)
chr1 (51-264)||(38564742-38564951)
chr1 (45-188)||(13987533-13987677)
[»] chr2 (4 HSPs)
chr2 (12-324)||(4397422-4397733)
chr2 (12-292)||(37128915-37129196)
chr2 (26-232)||(41958100-41958307)
chr2 (25-288)||(42048220-42048485)
[»] chr4 (7 HSPs)
chr4 (12-324)||(26500267-26500584)
chr4 (12-324)||(1798928-1799235)
chr4 (12-298)||(10388369-10388650)
chr4 (141-260)||(23040625-23040744)
chr4 (107-264)||(17416597-17416754)
chr4 (25-256)||(40813785-40814017)
chr4 (60-274)||(37707395-37707607)
[»] chr3 (4 HSPs)
chr3 (16-318)||(16284849-16285151)
chr3 (12-293)||(45181401-45181683)
chr3 (12-324)||(17324149-17324463)
chr3 (45-293)||(2782094-2782343)
[»] chr8 (4 HSPs)
chr8 (12-296)||(46218-46505)
chr8 (12-324)||(38387689-38388007)
chr8 (12-323)||(1578918-1579228)
chr8 (189-293)||(31179995-31180098)
[»] chr5 (11 HSPs)
chr5 (12-259)||(35846938-35847187)
chr5 (12-245)||(42742328-42742561)
chr5 (16-273)||(29685654-29685911)
chr5 (12-207)||(3204173-3204372)
chr5 (197-328)||(39368686-39368815)
chr5 (12-130)||(39368832-39368951)
chr5 (25-198)||(2706963-2707137)
chr5 (60-264)||(18557376-18557577)
chr5 (12-56)||(25362318-25362362)
chr5 (211-293)||(25341507-25341588)
chr5 (12-47)||(40377649-40377684)
[»] chr7 (6 HSPs)
chr7 (53-299)||(2569962-2570208)
chr7 (12-111)||(6003363-6003463)
chr7 (25-172)||(27993540-27993689)
chr7 (25-259)||(46262123-46262357)
chr7 (45-250)||(35206718-35206921)
chr7 (137-250)||(25153081-25153193)
[»] chr6 (2 HSPs)
chr6 (106-264)||(12129057-12129212)
chr6 (103-258)||(7546513-7546665)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 38710041 - 38709717
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38710041 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagcccaaagactcccgaaacaaggcaaaaaggca 38709942  T
Q  112 cctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcgg 211  Q
    ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38709941 cccctcaactcacgaaccaccagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcgg 38709842  T
Q  212 aacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacacccc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38709841 aacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccagcacacacccc 38709742  T
Q  312 aaccctcggctaggcaagtacaaac 336  Q
    | ||||||||||||||| |||||||    
T  38709741 agccctcggctaggcaactacaaac 38709717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 4391696 - 4391386
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaagg 109  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||   |||| ||||||||||| |||||||||||| |    
T  4391696 gacatcacaacagcctaaaag-acctgagtcacaaaacttgctcccgaccccgaatcaaaagcgattggcccacaagactcccgacacaaggcaaaaatg 4391598  T
Q  110 cacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggc 209  Q
    ||||  ||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4391597 cacccctcaactcacgaaccaccagaacagacaccttaacctgaccaaaacctcgacccaccaagaacccgatgccaaaatccaaagacagagaaaaggc 4391498  T
Q  210 ggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacacc 309  Q
    |||| |||||| |||||||||||| ||| |||| ||||   |||||||||||  ||| |||| ||| | |||||||||||||||||||||  | ||| ||    
T  4391497 ggaatagtagcacaaagcaaaccatctcgaacataaac---tcaaaacaagcacccaaatcatcctacatcaccaccacctgaatagaccggcgcacgcc 4391401  T
Q  310 ccaaccctcggctag 324  Q
    ||||||||| |||||    
T  4391400 ccaaccctcagctag 4391386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 39908886 - 39909016
Alignment:
Q  84 aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatg 183  Q
    ||||||| ||| ||||| |||||| |||||  ||||||||||||||| |||| || |||||| ||||||||||||||||||| |||||||||||||||||    
T  39908886 aagactcacgacacaagtcaaaaaagcacccctcaactcacgaaccaccagagcatacacctaaacctgtccaaaaactcgatccaccaataacccgatg 39908985  T
Q  184 ccaaaattcaaagacagagaaaaggcggaac 214  Q
    ||||||| ||||||||||||||||| |||||    
T  39908986 ccaaaatccaaagacagagaaaaggtggaac 39909016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 4397462 - 4397527
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatc 77  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4397462 gacatcacaacagcctaaaaggacctgagtcacaaacttactcccgaactcgaatcaaaagcgatc 4397527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 38564951 - 38564742
Alignment:
Q  51 gctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaac 149  Q
    |||||||| ||||||||||||||||||  ||||  |||||||  | ||||  ||||| ||||||  ||||||||||| ||||| || ||||||||| |||    
T  38564951 gctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatcaaaa-ggcacccctcaactcacgacccatctgagcaaacacctaaac 38564853  T
Q  150 ctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaa 249  Q
    ||||||  ||||||| |||||||| | || |||||| |||||| ||||| ||||| ||| |||| || ||| |||| | ||||||||| |||  |||||     
T  38564852 ctgtcc--aaactcg-cccaccaaaatcctgatgcc-aaattcgaagacggagaacaggtggaatagcagcacaaaacgaaccagctcgaacctaaacat 38564757  T
Q  250 atcaaaacaagccac 264  Q
    || ||||||||||||    
T  38564756 atgaaaacaagccac 38564742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 13987677 - 13987533
Alignment:
Q  45 aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac 143  Q
    ||||| |||||||| |||||| ||||||||||   ||||  ||| |||||| ||||  ||  ||||||||  ||||||||||||||| |||| || ||||    
T  13987677 aaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 13987578  T
Q  144 cttaacctgtccaaaaactcgacccaccaataacccgatgccaaa 188  Q
    |  ||||| || ||||||||| | |||||| |||| |||||||||    
T  13987577 caaaacctatctaaaaactcggctcaccaaaaacctgatgccaaa 13987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 4397422 - 4397733
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||| ||||| |||    
T  4397422 gacatcacaacaacctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggc 4397521  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||  ||||||||||||||| || | || |||| | ||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||||||    
T  4397522 acccctcaactcacgaaccaccatagcagacacataaacttgtccaaaaactcgacccaccaataactctatgccaaaatccaaagacagag-aaaggcg 4397620  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccc 310  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||  | |||||||    
T  4397621 gaacagtagcgcaaagcgaa-cagctcgaacacaaacaaatcaaaacaagccaccaaatcaacctgcatcaccaccaccagaaaagaccggcgcacaccc 4397719  T
Q  311 caaccctcggctag 324  Q
    ||||||||||||||    
T  4397720 caaccctcggctag 4397733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 37128915 - 37129196
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||  |||| ||||||||  | ||||| |||||||||    
T  37128915 gacatcacaacatcctgaaaggacttgagtcacaaacttgttccggacctcgaatcaaaagcgatcggcccacaagactcctaacacaagtcaaaaaggc 37129014  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||||||||||||||||||| |||| || |||||| ||||||||||||||||| ||| ||||| || |||||| |||||| |||||||||| ||||||||    
T  37129015 acctatcaactcacgaaccaccagagcagacacctgaacctgtccaaaaactcaaccaaccaaaaatccgatgtcaaaatccaaagacagaaaaaaggcg 37129114  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctga 292  Q
    |||||||||||| || | ||||||||| |||||||||||||||||| || |||||| | |   |||| ||||||||||||||    
T  37129115 gaacagtagcgccaaacgaaccagctcgaacacaaacaaatcaaaataatccaccaaaaccgtctgcatcaccaccacctga 37129196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 41958307 - 41958100
Alignment:
Q  26 ctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacg 125  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | ||  ||  |||||||| || ||||| ||||||||||||  |||||||||     
T  41958307 ctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagtggtcggccacaagactcctgacacaagtcaaaaaggcacccttcaactcaca 41958208  T
Q  126 aaccatcagaacaaacaccttaacctgtccaaaaactcgacccacca--ataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgca 223  Q
    ||||| |||| || |||||||||||||||||||||  | ||||| ||  |||||||||||||||||| | ||||||||| |||||  ||||| |||||||    
T  41958207 aaccaccagagcagacaccttaacctgtccaaaaatccaacccatcaatataacccgatgccaaaatccgaagacagag-aaaggtagaacattagcgca 41958109  T
Q  224 aagcaaacc 232  Q
    |||| ||||    
T  41958108 aagcgaacc 41958100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 42048220 - 42048485
Alignment:
Q  25 cctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcatcccaaag-actcccgaaacaaggcaaaaaggcacctatcaactc 122  Q
    ||||||||||| ||||||| ||| || |||||||  ||||||||||||| ||||| ||||  | |||||||| | ||  ||| ||||||||| |||||||    
T  42048220 cctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctctcaactc 42048319  T
Q  123 acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgc 222  Q
    |||||||| |||| || |||||||||| |||||||||||||| ||||||| || || || |||||| | | |||||||||  |||| ||||||  |  ||    
T  42048320 acgaaccaccagagcagacaccttaacatgtccaaaaactcggcccaccattatccagaggccaaattcctaagacagagggaaggtggaacaacaatgc 42048419  T
Q  223 aaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccac 288  Q
    ||| | ||||||||| |||| ||||||| ||||||||||||| | |||||| ||| || |||||||    
T  42048420 aaatcgaaccagctcgaacataaacaaaccaaaacaagccacaaaatcaacatgcatcgccaccac 42048485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 26500267 - 26500584
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||| ||||| |||||||||    
T  26500267 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccgacacaagtcaaaaaggc 26500366  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaa--ctcgacccac--caataacccgatgccaaaattcaaagacagagaaaa 206  Q
    |||  |||||||||||||||  ||| || |||||||||||||||||||||  ||||||||||  |||||||| |||||||||||||||||||||||||||    
T  26500367 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 26500466  T
Q  207 ggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacac 306  Q
    |||||||||  ||| |||||| || |||||| |||| ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| || ||     
T  26500467 ggcggaacaaaagcacaaagcgaatcagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacaccaccacctgaatagaccgacgcaa 26500566  T
Q  307 accccaaccctcggctag 324  Q
    |||||||||||| |||||    
T  26500567 accccaaccctcagctag 26500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 1799235 - 1798928
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||| | |||||||||||||||| |||||||||||||| ||||| |||||||||||| |    | | ||||||||  | ||||| |||||||||    
T  1799235 gacatcacaatagcctaaaaggacctgagacacaaacttgctcctgacctagaatcaaaagcgtttggtcaacaagactccttacacaagtcaaaaaggc 1799136  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||  ||||||||||||||| | || || |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  1799135 acccctcaactcacgaaccaccggagcagacaccttaacctatccaaaaactcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggca 1799036  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccc 310  Q
    ||||| ||||||||||  ||||||||| |||||||      |||||| |||||||| | |||||||| ||||||||||||||||||| |  | |||||||    
T  1799035 gaacaatagcgcaaagtgaaccagctcgaacacaa------caaaaccagccaccaaaacaacctgcatcaccaccacctgaatagatcggcgcacaccc 1798942  T
Q  311 caaccctcggctag 324  Q
    ||||||||||||||    
T  1798941 caaccctcggctag 1798928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 10388650 - 10388369
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||| ||||||| |||  |||| ||||||| |    
T  10388650 gacatcacaacagcctaaaaggacctgagtcataaacttgctcccgacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagac 10388551  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    | |  |||||||||||| ||  ||| || ||||||| || ||||| |||||| |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  10388550 atccctcaactcacgaagcactagagcagacacctttacatgtcccaaaacttgacccatcaataacccgatgccaaaatccaaagagagagaaaaggcg 10388451  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagac 298  Q
    ||||||||||||||||| |||  |      ||||||| || ||||| || |||||| |||||||||| ||||||||||||||||||||    
T  10388450 gaacagtagcgcaaagcgaacggg------cacaaactaaccaaaaaaatccaccaaatcaacctgcatcaccaccacctgaatagac 10388369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 23040625 - 23040744
Alignment:
Q  141 caccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaa 240  Q
    |||||||||||||| ||||||||||||| |||| || ||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||| ||    
T  23040625 caccttaacctgtctaaaaactcgaccctccaaaaatccgatgccaaaatccatagacagagaaaagacggaacagtagcgcaaagcgaaccagctcgaa 23040724  T
Q  241 cacaaacaaatcaaaacaag 260  Q
    |||||| |||||||||||||    
T  23040725 cacaaataaatcaaaacaag 23040744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 107 - 264
Target Start/End: Original strand, 17416597 - 17416754
Alignment:
Q  107 aggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaa 206  Q
    |||||||  |||||||||||||||  |||  | ||||||||||||||||||||||||| ||||| |  ||||  |||||||| | | |||||||||||||    
T  17416597 aggcacccctcaactcacgaaccactagagtagacaccttaacctgtccaaaaactcggcccacaataaaccaaatgccaaattcctaagacagagaaaa 17416696  T
Q  207 ggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccac 264  Q
    || | |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  17416697 ggtgaaacaatagcgcaaagcgaaccagctcgaacacaaacaaatcaaaacaagccac 17416754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 40813785 - 40814017
Alignment:
Q  25 cctaaaaggacctgagtcacaaacttg-ctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc 122  Q
    |||||||| |||||||||| ||| ||| ||||||| ||||||||||||| ||||  ||||  ||||||||||  |||  || |||||||||  |||| ||    
T  40813785 cctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacccttcaattc 40813884  T
Q  123 acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgc 222  Q
    ||||||||  ||| || |||||||||||| |||||||||||| |||||||  |||| |||||| |||||| ||| ||||||||||| |||||||||||||    
T  40813885 acgaaccactagagcagacaccttaacctatccaaaaactcggcccaccataaaccagatgcc-aaattcgaaggcagagaaaaggtggaacagtagcgc 40813983  T
Q  223 aaagcaaaccagctcaaacacaaacaaatcaaaa 256  Q
    ||| | ||||||||| || | ||||||| |||||    
T  40813984 aaaacgaaccagctcgaatataaacaaaccaaaa 40814017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 37707395 - 37707607
Alignment:
Q  60 ctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa 158  Q
    ||||||||||||| ||||  ||||  |||||||||| |||  |||||||||||||  ||||||||||||||| |||| || |||||  || || ||||||    
T  37707395 ctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatccaaa 37707494  T
Q  159 aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca 258  Q
    ||||||||||||||| |||| |||||| ||  ||||||||  ||| | || |||| |||||  |||| | | ||||||| |||| |||||||||||| ||    
T  37707495 aactcgacccaccaaaaaccagatgcc-aagctcaaagac--agacacggtggaatagtagtacaaatcgatccagctcgaacagaaacaaatcaaacca 37707591  T
Q  259 agccaccatatcaacc 274  Q
    |||||| | |||||||    
T  37707592 agccacaaaatcaacc 37707607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 16285151 - 16284849
Alignment:
Q  16 tcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacct 114  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||| || || || ||||||||||||     
T  16285151 tcacaacagcctaaaaggacctgagtcgcaaacttgctcccgacctcgaatcaaaagcgatcggcccacaagactccagacactagtcaaaaaggcaccc 16285052  T
Q  115 atcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaac 214  Q
     |||||||||||||||  ||| || |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||| || |||    
T  16285051 ctcaactcacgaaccacaagagcagacaccttaacctgtccaaaaactcgacccaccaatagctcgatgccaaaat-caaagacagcgaaaagacgaaac 16284953  T
Q  215 agtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaac 314  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||  | |||||||||||    
T  16284952 agtagtgcaaagtgaaccagctcgaacacaaacaaatcaaaacaagccaccaaatcaacctgcatcaccaccacatgaatagaccggcgcacaccccaac 16284853  T
Q  315 cctc 318  Q
    ||||    
T  16284852 cctc 16284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 45181683 - 45181401
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||| ||||||||||| | ||| |||||||||    
T  45181683 gacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagcgattggcccacaagactcccgacaaaagtcaaaaaggc 45181584  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||  ||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |    
T  45181583 acccctcaactcacgaaccaccagagcagacaccctaacctgtccaaaaactcgacccaccaataacccaatgccaaaatccaaagacagaaaaaaggtg 45181484  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 293  Q
    ||| ||||||||||| | ||||| ||| |||||||||||| |||| |||||||||| |||||  ||| |||||||||||||||    
T  45181483 gaatagtagcgcaaaacgaaccaactcgaacacaaacaaaacaaaccaagccaccaaatcaatatgcatcaccaccacctgaa 45181401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 17324149 - 17324463
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||||| ||||  |||| ||||||| ||| | |||  ||||||||    
T  17324149 gacatcacaatagcttaaaaggacctaagtcagaaacttgctcccgacctcgaatcaaaagagatcggcccacaagactcacgacataagtaaaaaaggc 17324248  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||  ||||||||||||||| | ||  | |||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||    
T  17324249 acccctcaactcacgaaccaccggagtagacacctaaacctatccaaaaactcgacccaccaataacccgatgtcaaaatccaaagacggggaaaaggcg 17324348  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagcc-accatatcaacctgcgtcaccaccacctgaatagaccaacacacacc 309  Q
    ||| |||||| |||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||  | | ||||    
T  17324349 gaatagtagcacaaagcgaaccagctcgaacacaaacaaatcaaaacaagccaaccaaatcaacctgcatcaccaccacttgaatagacctgcgctcacc 17324448  T
Q  310 ccaaccctcggctag 324  Q
    ||||||||| |||||    
T  17324449 ccaaccctcagctag 17324463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 293
Target Start/End: Original strand, 2782094 - 2782343
Alignment:
Q  45 aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac 143  Q
    ||||| |||||||| ||  ||||||||| |||| |||||  |||||| ||| ||||  ||  ||||||||  ||||||||| ||||| |||| || ||||    
T  2782094 aaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcagacac 2782193  T
Q  144 cttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacac 243  Q
    ||||||||||||||||||||| ||||||| || |  ||||||||| |   ||| || |||||||| ||||||  |||||||| | ||||||||| | ||     
T  2782194 cttaacctgtccaaaaactcggcccaccattatctagatgccaaattcgtaagccaaagaaaaggtggaacaacagcgcaaatcgaaccagctcgagcat 2782293  T
Q  244 aaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 293  Q
    ||||||| |||| ||||| || | ||||| |||| |||||||||| ||||    
T  2782294 aaacaaaccaaatcaagctacaaaatcaaactgcatcaccaccacttgaa 2782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 46218 - 46505
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||   |||| ||||||||||| ||||| |||||||||    
T  46218 gacatcacaacaacctaaaaggacctgagtcagaaacttgctcccgacctggaatcaaaagcgattggcccacaagactcccgacacaagtcaaaaaggc 46317  T
Q  111 acctatcaactcacgaacc-atcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggc 209  Q
    |||  |||||||||||||| | | || || |||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||    
T  46318 acccctcaactcacgaacccaccggagcagacacataaacctgtccaaaaactcgacccaccaataacccgatgtcaaaatccaaagacaaagaataggc 46417  T
Q  210 ggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagcc-accatatcaacctgcgtcaccaccacctgaatag 296  Q
    ||||||||||| |||||| |||| |||| |||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||    
T  46418 ggaacagtagcacaaagcgaaccggctcgaacacaaacaaatcaaaacaagccaaccaaatcaacctgcatcaccaccacttgaatag 46505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 38388007 - 38387689
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||| |||   |||| ||||||||||| | ||| |||||||||    
T  38388007 gacatcacaatagcctaaaaggacctgagtcacaaacttgctcctgaccttgaatcaaaagtgattggcccacaagactcccgacataagtcaaaaaggc 38387908  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcg 210  Q
    |||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||| | |    
T  38387907 acccctcaactcacgaaccaccagagcaaacaccttaacctgtccaaaaactcgacccaccaataacctgatggcaaaatccaaagatagagaaaatggg 38387808  T
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaa-----caaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacaca 305  Q
    ||||| ||| ||||||| ||||||||| ||||||||     |||| ||||||||||||||| | ||||||||   |||||||||| ||||||||  | ||    
T  38387807 gaacaatagtgcaaagcgaaccagctcgaacacaaacaaaacaaaacaaaacaagccaccaaaccaacctgcaagaccaccacctaaatagaccggcgca 38387708  T
Q  306 caccccaaccctcggctag 324  Q
    |||||||||||||||||||    
T  38387707 caccccaaccctcggctag 38387689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 1579228 - 1578918
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaa-acttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaagg 109  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||| | |||||||||| ||||  |||| ||||||||| | |||||  ||| |||    
T  1579228 gacatcacaacaacctagaaggacctgagtcacaagacttgctcccgactttgaatcaaaagtgatcggcccacaagactcccaacacaagtaaaagagg 1579129  T
Q  110 cacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggc 209  Q
    || |  ||||||||||||||| |||| || |||||| ||||| ||||||| || ||||| |||| ||| |||||||||||| ||||||||||||| | ||    
T  1579128 catccctcaactcacgaaccaccagagcagacacctaaacctatccaaaaccttgacccgccaagaacacgatgccaaaatccaaagacagagaacaagc 1579029  T
Q  210 ggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacacc 309  Q
     ||| ||||||||||||| || || ||| |||||||||   ||||| |||||||||| ||||  |||| ||| ||||||| ||||  |||  | ||| ||    
T  1579028 agaatagtagcgcaaagcgaatcaactcgaacacaaac---tcaaatcaagccaccaaatcactctgcatcagcaccacccgaattaaccggcgcacgcc 1578932  T
Q  310 ccaaccctcggcta 323  Q
    ||||||||||||||    
T  1578931 ccaaccctcggcta 1578918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 31179995 - 31180098
Alignment:
Q  189 attcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccac 288  Q
    |||||||| ||||||||||| ||| || ||||| ||| | || |||||  |||||||||||| ||||||||||||  | |||||||||| ||||||||||    
T  31179995 attcaaaggcagagaaaaggtggagcaatagcgaaaatcgaaacagcttgaacacaaacaaa-caaaacaagccatgaaatcaacctgcatcaccaccac 31180093  T
Q  289 ctgaa 293  Q
     ||||    
T  31180094 ttgaa 31180098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 35847187 - 35846938
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaa-gg 109  Q
    ||||||||| || |||||||||||| ||||||||||| |||||||||||||||||||||| |||||  |||| || |||||||| ||||| |||||| ||    
T  35847187 gacatcacagcagcctaaaaggacccgagtcacaaacgtgctcccgacctcgaatcaaaatcgatcggcccacaaaactcccgacacaagtcaaaaaagg 35847088  T
Q  110 cacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggc 209  Q
    |||| |||||||||| ||||| |||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||     
T  35847087 cacccatcaactcacaaaccaccagagcagacaccttaacatgtccaaaaacttgacccaccaataacccgatgccaaaatccaaagacaaagaaaaggt 35846988  T
Q  210 ggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaa 259  Q
    |||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  35846987 ggaacaatagcataaagcgaaccagctcgaacacaaacaaatcaaaacaa 35846938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 42742328 - 42742561
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggca 111  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||| ||||| ||||||||||    
T  42742328 gacatcacaacagcctaaaaggacatgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgcccacaagactcccgacacaagtcaaaaaggca 42742427  T
Q  112 cctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcgg 211  Q
    ||   |||| ||||||||| |||| || |||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||  |     
T  42742428 ccccacaacccacgaaccaccagagcagacacctaaacctgttcaaaaacttgacccaccaataacccgatgccaaaatccaaaaacagagaaaagttga 42742527  T
Q  212 aacagtagcgcaaagcaaaccagctcaaacacaa 245  Q
    |||||||||||||||| ||| | |||||||||||    
T  42742528 aacagtagcgcaaagccaactaactcaaacacaa 42742561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 29685911 - 29685654
Alignment:
Q  16 tcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacct 114  Q
    |||||| | |||||||||| |||||||||||||| ||||||||| |||||||||||| ||||  ||||  |||||||||| ||| | ||  |||| ||      
T  29685911 tcacaaaagcctaaaaggatctgagtcacaaactagctcccgacttcgaatcaaaagtgatcgacccattagactcccgacacaggtcattaaggtactc 29685812  T
Q  115 atcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaac 214  Q
     ||||||||||||||| |||| || || ||||||||||| ||||||||| ||||||||||||||  |||||||| | ||||||||||||||||| |||||    
T  29685811 ctcaactcacgaaccaccagagcagaccccttaacctgttcaaaaactcaacccaccaataaccatatgccaaattccaaagacagagaaaaggtggaac 29685712  T
Q  215 agtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaac 273  Q
    |||| |||||||  ||||||||| ||||||||| |||||||||||||||| | ||||||    
T  29685711 agtaacgcaaagtgaaccagctcgaacacaaac-aatcaaaacaagccacaaaatcaac 29685654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 3204372 - 3204173
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||| ||||    ||| |||||||  || |||||  ||||||||    
T  3204372 gacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaaaacgattggtccacaagactct-gacacaagttaaaaaggc 3204274  T
Q  111 acctatcaactcacgaaccatcagaacaaacaccttaa----cctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaa 206  Q
    |||  ||||||||||| ||| |||| || |||||||||    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3204273 acccctcaactcacgagccaccagagcatacaccttaattaacctgaccaaaacctcgacccaccaataacccgatgccaaaattcaaagacagagaaaa 3204174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 39368815 - 39368686
Alignment:
Q  197 acagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatag 296  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||||||||  |||||||||||||||| | |||| ||| ||||||||||||||||||    
T  39368815 acagagaaaaggcggaacaaaagcgcacagcaaaccagctcgaacacaaaca--tcaaaacaagccaccaaaacaacttgcatcaccaccacctgaatag 39368718  T
Q  297 accaacacacaccccaaccctcggctaggcaa 328  Q
    |||  | ||||||||||||||| |||||||||    
T  39368717 accggcgcacaccccaaccctcagctaggcaa 39368686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 39368951 - 39368832
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||  |||| ||||||||||| ||||| ||||||| |    
T  39368951 gacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgacctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagac 39368852  T
Q  111 acctatcaactcacgaacca 130  Q
    |||| |||||||||||||||    
T  39368851 acctctcaactcacgaacca 39368832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 2707137 - 2706963
Alignment:
Q  25 cctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactca 123  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||    ||  |||||||||| ||||| ||  || |||||  ||||||||    
T  2707137 cctaaaaggacatgagtcacaaactagctcccgacctcgaatcaaaagtgatcggttcactagactcccgacacaagtcattaaagcacccctcaactca 2707038  T
Q  124 cgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagac 198  Q
    ||||||| | || ||  ||||||||||||||||| |||||| | ||||||||||| ||||||||| | |||||||    
T  2707037 cgaaccaccggagcaggcaccttaacctgtccaagaactcggcacaccaataaccagatgccaaattccaaagac 2706963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 18557577 - 18557376
Alignment:
Q  60 ctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaa 159  Q
    ||||||||||||| ||||  |||| |||||||||| ||||  ||||| ||||||  ||||||||||| ||| ||||  | ||||||||||||| ||  ||    
T  18557577 ctcgaatcaaaagtgatcggcccatagactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtagacaccttaacctgccc--aa 18557480  T
Q  160 actcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaa 259  Q
    ||||| |||||||||| ||| ||||| ||| || |||||| |||||||| ||||||  |||||||| | | ||||||| ||||  |||||| ||| ||||    
T  18557479 actcggcccaccaatatcccaatgcc-aaactcgaagacaaagaaaaggtggaacaacagcgcaaatcgatccagctcgaacaacaacaaaccaacacaa 18557381  T
Q  260 gccac 264  Q
    |||||    
T  18557380 gccac 18557376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25362362 - 25362318
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctccc 56  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  25362362 gacatcacaacagcctaaaaggacctgagtcacaaacttgctccc 25362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 25341588 - 25341507
Alignment:
Q  211 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 293  Q
    ||||| ||||||||| | ||||||||| | |||||||||||||||||||||||| | || ||||||| |||||||||| ||||    
T  25341588 gaacaatagcgcaaa-cgaaccagctcgagcacaaacaaatcaaaacaagccacaaaattaacctgcatcaccaccacttgaa 25341507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 40377684 - 40377649
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaa 47  Q
    |||||||||||| |||||||||||||||||||||||    
T  40377684 gacatcacaacagcctaaaaggacctgagtcacaaa 40377649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 53 - 299
Target Start/End: Complemental strand, 2570208 - 2569962
Alignment:
Q  53 tcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacct 151  Q
    |||||||||||||||||||||||| | ||||  ||||||| || ||||| ||||||||||||  ||||||||||| | | |||| |||||||||||| ||    
T  2570208 tcccgacctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacaccttaatct 2570109  T
Q  152 gtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaat 251  Q
    | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||| ||||| |||||||    
T  2570108 gaccaaaacctcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggcggatcagtagcacaaagcgaaccagctcgaacac-aacaaat 2570010  T
Q  252 caaaacaagccaccatatcaacctgcgtcaccaccacctgaatagacc 299  Q
    || ||||| | |||| || ||| ||| |||||||||||||||||||||    
T  2570009 cacaacaaactaccaaattaacttgcatcaccaccacctgaatagacc 2569962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 6003463 - 6003363
Alignment:
Q  12 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggc 110  Q
    |||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||  |||| |||||||| || ||||  |||||||||    
T  6003463 gacatcacaacagcctaaaaggacctgagacacaaatttgcttccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggc 6003364  T
Q  111 a 111  Q
    |    
T  6003363 a 6003363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 27993540 - 27993689
Alignment:
Q  25 cctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc 122  Q
    |||||||| ||||| |||| ||| || |||||||| ||||||||||||| ||||   |||  |||||||||| ||||  || |||| ||||  |||||||    
T  27993540 cctaaaagaacctgcgtcagaaaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactc 27993639  T
Q  123 acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccacca 172  Q
    |||||||| |||| |||||||| |||||| |||||||||||| |||||||    
T  27993640 acgaaccaccagagcaaacaccataacctatccaaaaactcggcccacca 27993689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 46262123 - 46262357
Alignment:
Q  25 cctaaaaggacctgagtcac-aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc 122  Q
    |||||||| ||| ||||||  ||||| |||||||| ||||||||||||| ||||  ||||  |||||||| | || |  ||||||||||||  |||||||    
T  46262123 cctaaaagaaccagagtcaagaaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctcaactc 46262222  T
Q  123 acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgc 222  Q
    ||||| || | ||  | ||||| ||| || |||||||||||| |||||||| | || ||||||||| |   ||||||||  || || ||||||||||| |    
T  46262223 acgaatcaccggagaagacaccataaactatccaaaaactcggcccaccaaaacccagatgccaaattgataagacaga--aacggtggaacagtagctc 46262320  T
Q  223 aaagcaaaccagctcaaacacaaacaaatcaaaacaa 259  Q
    ||| | | |||||||||||| ||||||| ||||||||    
T  46262321 aaatcgatccagctcaaacaaaaacaaaccaaaacaa 46262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 35206718 - 35206921
Alignment:
Q  45 aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac 143  Q
    ||||| |||||||| |||| |||||||| ||||  ||||  |||||||| | ||||   ||||||| |||  |||||||| || ||| |||| || ||||    
T  35206718 aaactagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcagacac 35206817  T
Q  144 cttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacac 243  Q
    |||||| ||||||||   ||| |||||||||| ||| |||||||| | ||||||||||||||||  ||||||  || ||||| | | ||||||| ||||     
T  35206818 cttaacttgtccaaat--tcggcccaccaatatcccaatgccaaact-caaagacagagaaaagatggaacaacagtgcaaaccgatccagctcgaacaa 35206914  T
Q  244 aaacaaa 250  Q
    |||||||    
T  35206915 aaacaaa 35206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 25153193 - 25153081
Alignment:
Q  137 caaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagct 236  Q
    ||||||||||||||||||||||||||||  |||||| ||  | |||||| ||||||| | ||| |||| ||| ||||||| | || |||   ||||||||    
T  25153193 caaacaccttaacctgtccaaaaactcggaccaccattattcagatgcc-aaattcataaacatagaataggtggaacagcaacgtaaattgaaccagct 25153095  T
Q  237 caaacacaaacaaa 250  Q
    | |||| |||||||    
T  25153094 cgaacataaacaaa 25153081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 264
Target Start/End: Complemental strand, 12129212 - 12129057
Alignment:
Q  106 aaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaa 205  Q
    |||||||| |||||||||||| ||| ||||  | |||||| ||| ||||||||  |||| ||||||| || |||||||||||| ||| ||||| ||||||    
T  12129212 aaggcacccatcaactcacgacccaccagagaagacacctaaacttgtccaaa--ctcggcccaccattatcccgatgccaaa-ttcgaagacggagaaa 12129116  T
Q  206 aggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccac 264  Q
    ||| |||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||    
T  12129115 aggtggaacagtggcgcaaatcaaaccagctcgaacaaaaacaaatcaaaacaagccac 12129057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 7546513 - 7546665
Alignment:
Q  103 aaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattca-aagacaga 201  Q
    |||||||||||  ||||||||||||||| |||| || ||||| |||||| ||||||||||||||||| ||| | ||  ||||| ||||||| |||||  |    
T  7546513 aaaaaggcacccctcaactcacgaaccaccagagcagacaccataacctatccaaaaactcgaccca-caaaacccatatgcc-aaattcataagac--a 7546608  T
Q  202 gaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca 258  Q
    |||| || |||||| ||||||||| | | |||||||||||| ||||||| |||||||    
T  7546609 gaaacggtggaacaatagcgcaaatcgatccagctcaaacagaaacaaaccaaaaca 7546665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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