View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7367_low_1 (Length: 463)
Name: NF7367_low_1
Description: NF7367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7367_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 54012661 - 54013095
Alignment:
| Q |
14 |
atatgagccaagaaaacaaaatgtggtaccgtagtgccatttcctgcattgataaagattcaatacaactttattatcataatgtggattattaatattt |
113 |
Q |
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| T |
54012661 |
atatgagccaagaaaacaaagcgtggtaccgtagcgccatttcctgcattgataaagattcaatacaactttattatcataatgtggattattagtattt |
54012760 |
T |
|
| Q |
114 |
agatgaaaatagtgaattaatcataggacaagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgccta |
213 |
Q |
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| T |
54012761 |
agatgaaaatagtgaattaatcataggacaagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgccta |
54012860 |
T |
|
| Q |
214 |
atgcgtcaaagagaggcataaagaggcagaaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012861 |
atgcgtcaaagagaggcataaagaggcagaaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaata |
54012960 |
T |
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| Q |
314 |
cacattggttggaccactatatagataaatgcatgctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggtagataaatc |
413 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012961 |
cacattggttggaccactatatagataaatgcaggctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggtagataaatc |
54013060 |
T |
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| Q |
414 |
atgcaggggaaatttaataggcttctagcaatatg |
448 |
Q |
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| T |
54013061 |
atgcaggggaaatttaataggcttctagcaatatg |
54013095 |
T |
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