View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7367_low_3 (Length: 311)

Name: NF7367_low_3
Description: NF7367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7367_low_3
NF7367_low_3
[»] chr5 (11 HSPs)
chr5 (20-298)||(1437421-1437699)
chr5 (22-131)||(32172653-32172762)
chr5 (79-131)||(11457154-11457207)
chr5 (195-248)||(42131566-42131619)
chr5 (32-131)||(2568667-2568767)
chr5 (32-127)||(35095751-35095847)
chr5 (21-119)||(41957424-41957522)
chr5 (92-130)||(7674718-7674756)
chr5 (33-131)||(30217092-30217190)
chr5 (72-121)||(38766516-38766566)
chr5 (79-131)||(38047840-38047893)
[»] chr2 (9 HSPs)
chr2 (130-298)||(34922553-34922714)
chr2 (22-131)||(36415635-36415743)
chr2 (32-131)||(7283005-7283105)
chr2 (31-109)||(34652019-34652098)
chr2 (78-131)||(5759536-5759589)
chr2 (39-131)||(41809206-41809299)
chr2 (72-124)||(44606078-44606131)
chr2 (80-131)||(5902510-5902562)
chr2 (72-127)||(9878647-9878703)
[»] chr6 (8 HSPs)
chr6 (32-109)||(28088206-28088283)
chr6 (34-131)||(281809-281907)
chr6 (38-131)||(2460112-2460206)
chr6 (79-131)||(769194-769247)
chr6 (79-131)||(32917253-32917306)
chr6 (92-130)||(26559201-26559239)
chr6 (32-131)||(2455819-2455919)
chr6 (32-131)||(32975987-32976087)
[»] chr3 (8 HSPs)
chr3 (32-128)||(37273143-37273240)
chr3 (32-131)||(43115065-43115165)
chr3 (78-125)||(2923533-2923581)
chr3 (37-102)||(36200110-36200176)
chr3 (31-127)||(21574498-21574595)
chr3 (32-88)||(23785264-23785320)
chr3 (32-131)||(26542546-26542646)
chr3 (72-111)||(41724261-41724301)
[»] chr4 (5 HSPs)
chr4 (32-130)||(23819098-23819197)
chr4 (38-131)||(27123313-27123407)
chr4 (32-131)||(4798527-4798627)
chr4 (32-108)||(53673642-53673719)
chr4 (31-130)||(19304934-19305034)
[»] chr1 (7 HSPs)
chr1 (22-104)||(27140478-27140560)
chr1 (34-131)||(32515402-32515500)
chr1 (37-112)||(28689432-28689508)
chr1 (24-131)||(35080031-35080138)
chr1 (70-131)||(38578575-38578637)
chr1 (32-68)||(8130445-8130481)
chr1 (32-131)||(17420212-17420312)
[»] chr7 (4 HSPs)
chr7 (32-131)||(33645921-33646021)
chr7 (92-133)||(6633934-6633975)
chr7 (80-131)||(29574586-29574638)
chr7 (72-131)||(36537957-36538017)
[»] chr8 (5 HSPs)
chr8 (32-107)||(25869251-25869327)
chr8 (33-131)||(13000385-13000484)
chr8 (22-131)||(11569418-11569527)
chr8 (91-131)||(2487969-2488009)
chr8 (32-131)||(7714251-7714351)
[»] scaffold0110 (1 HSPs)
scaffold0110 (22-108)||(4207-4293)
[»] scaffold0147 (1 HSPs)
scaffold0147 (22-109)||(12687-12775)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 1437699 - 1437421
Alignment:
Q  20 attataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgtataagttgtttccataagttcatccaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1437699 attataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgtataagttgtttccataagttcgtccaaa 1437600  T
Q  120 cagtctcacaagcagtggaggagacacgttgtagtcaggggatgcagctgcaacccctcaactatataaactacgcctaattttcaagctttttcctact 219  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  1437599 cagtctcacaagcagtgtaggagccacgttgtagtcaggggatgcagctgcgacccctcaactatataaactacacctaattttcaagctttttcctact 1437500  T
Q  220 atgaatcccctcaaatttcacggttgcacttgcaccttatatgccaattttctctcttctcttctatgactattgagta 298  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1437499 atgaatcccctcaaatttcacggttgaacttgtaccttatatgccaattttctctcttctcttctatgactattgagta 1437421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 32172653 - 32172762
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaac 120  Q
    ||||||||||||| |||||||||||||| | | || ||||||| ||| | |||| | ||||||||||||| |||||||||||||||||| ||  ||||||    
T  32172653 tataagctgtttt-cataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaac 32172751  T
Q  121 agtctcacaag 131  Q
      |||||||||    
T  32172752 tatctcacaag 32172762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 11457154 - 11457207
Alignment:
Q  79 cttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||||||||||| |||||||||||||||||| || || |||||||||||||||    
T  11457154 cttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaag 11457207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 42131566 - 42131619
Alignment:
Q  195 cctaattttcaagctttttcctactatgaatcccctcaaatttcacggttgcac 248  Q
    |||||||||| ||||||||||||  ||||| ||||||||||||||| |||||||    
T  42131566 cctaattttctagctttttcctatcatgaaccccctcaaatttcactgttgcac 42131619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 2568667 - 2568767
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    |||||||||||||||||||| |||| ||| ||| ||| | ||||  ||||||| | |||| ||||| ||||| ||||||||| || |||||||||| |||    
T  2568667 ttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttcttctaaacagtctctcaa 2568766  T
Q  131 g 131  Q
    |    
T  2568767 g 2568767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 35095847 - 35095751
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctca 127  Q
    ||||||| ||||||| || |||||| ||||||| ||| | |||||| | |||| |||||| ||||| | |||||||||| || ||||||||||||||    
T  35095847 ttttcatgagctatcttgtaaagcttatggaaataagttgaaaacggcatatgtacatgtcataagatatttccataagctcttccaaacagtctca 35095751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 41957522 - 41957424
Alignment:
Q  21 ttataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaa 119  Q
    |||||||||||||| ||||||||||| | || | || ||| ||| ||||| ||||| |||||||||||||| ||||| ||||||| |||| || ||||||    
T  41957522 ttataagctgtttt-cataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctcttccaaa 41957424  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 7674718 - 7674756
Alignment:
Q  92 ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  7674718 ataagttgtttccataagttcttccaagcagtctcacaa 7674756  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 30217092 - 30217190
Alignment:
Q  33 tttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgtataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||||||||| |||| |||| ||||||| ||    ||||| ||||||||||||| ||||| |  ||||||||| ||  | |||||||||||||||    
T  30217092 tttcataagctatcctggagagcttatggaaataaacctaaaacaacttatggacatgcataagataattccataagctctcctaaacagtctcacaag 30217190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 38766566 - 38766516
Alignment:
Q  72 aaaacgacttatggacatgt-ataagttgtttccataagttcatccaaaca 121  Q
    ||||| |||||||||| ||| ||||||||||||||||||||| ||||||||    
T  38766566 aaaacaacttatggacgtgtcataagttgtttccataagttcttccaaaca 38766516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 38047893 - 38047840
Alignment:
Q  79 cttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||||||||||| |||||||||||||||||| ||  |||||||||| ||||||    
T  38047893 cttatggacatgtcataagttgtttccataagctctcccaaacagtcacacaag 38047840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 298
Target Start/End: Complemental strand, 34922714 - 34922553
Alignment:
Q  130 agcagtggaggagacacgttgtagtcaggggatgcagctgcaacccctcaactatataaactacgcctaattttcaagctttttcctactatgaatcccc 229  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||  ||| |||| |||||||||||||| ||||||||||| ||     
T  34922714 agcagtggcggagccacgttgtagtcaggg-atgcagctgcaacccctcaactttataagttacacctatttttcaagcttttttctactatgaattccg 34922616  T
Q  230 tcaaatttcacggttgcacttgcaccttatatgccaattttctctcttctcttctatgactattgagta 298  Q
    | |||||||||||||      ||||||||||||||||||||||||| |||||||  ||| |||||||||    
T  34922615 ttaaatttcacggtt------gcaccttatatgccaattttctctcctctcttcagtgattattgagta 34922553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 36415743 - 36415635
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgtataagttgtttccataagttcatccaaaca 121  Q
    ||||||||||||| |||||||||||||| | | || | | ||| ||||| ||||| ||||||| |||||||||||||||||| ||||||||  |||||||    
T  36415743 tataagctgtttt-cataagctatcatgtagaacttacgaaaataagatgaaaacaacttatgcacatgtataagttgtttctataagttctcccaaaca 36415645  T
Q  122 gtctcacaag 131  Q
     | |||||||    
T  36415644 atgtcacaag 36415635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 7283005 - 7283105
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||   ||| |||| ||||| | ||||| ||||| |||||||||||| | |||||||||||||| ||| | ||||||| ||||||||||    
T  7283005 ttttcataagctatgtgggagagcttatggatataagatgaaaacaacttatggacatatcataagttgtttccaaaagctaatccaaatagtctcacaa 7283104  T
Q  131 g 131  Q
    |    
T  7283105 g 7283105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 34652098 - 34652019
Alignment:
Q  31 tttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataag 109  Q
    |||||||||||||||| |||| |||| ||||||| ||| | |||||  ||||||||||||| |||||||||||| |||||    
T  34652098 tttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataag 34652019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 5759589 - 5759536
Alignment:
Q  78 acttatggacatgtataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||||||||| |||| |||||||||||| ||  |||||||||||||||||    
T  5759589 acttatggacatgtctaagctgtttccataagctctcccaaacagtctcacaag 5759536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 41809299 - 41809206
Alignment:
Q  39 aagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||| | ||||||| ||||||| ||| | ||||| ||||||| |||||| |||||||||||||| ||| || | ||| ||||||||||||    
T  41809299 aagctatcttagaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaag 41809206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 44606131 - 44606078
Alignment:
Q  72 aaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtc 124  Q
    ||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  44606131 aaaacaacttatggacatgtcataagttgttttcataagttcttccaaacagtc 44606078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 5902562 - 5902510
Alignment:
Q  80 ttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  5902562 ttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaag 5902510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 9878703 - 9878647
Alignment:
Q  72 aaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctca 127  Q
    ||||| |||||||||||||| |||||||||||||||||| || |||  |||||||||    
T  9878703 aaaacaacttatggacatgtcataagttgtttccataagctcttccctacagtctca 9878647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 28088283 - 28088206
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgtataagttgtttccataag 109  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||| || ||| |||||||||||||||||||||||||    
T  28088283 ttttcataagctatcatggagagctcatggaaataagctcaaaacaacctatagacatgtataagttgtttccataag 28088206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 281907 - 281809
Alignment:
Q  34 ttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||||||||||| | || |||||||||||| ||| | ||||| |||||| ||||||| |||||||| |||||| || ||  |||||||||||||||||    
T  281907 ttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaag 281809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 2460206 - 2460112
Alignment:
Q  38 taagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||| ||||| |||| ||||||| ||| | ||||| |||||  ||||||| |||||||||||||||||| ||   ||||||||||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 2460112  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 769194 - 769247
Alignment:
Q  79 cttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  769194 cttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaag 769247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 32917253 - 32917306
Alignment:
Q  79 cttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||||||||||| |||||||||||||||||| ||  |||||||||||||||||    
T  32917253 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaag 32917306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 26559239 - 26559201
Alignment:
Q  92 ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  26559239 ataagttgttttcataagttcttccaaacagtctcacaa 26559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 2455819 - 2455919
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||| |||| |||| ||||||| ||| | ||||    |||||| ||||| |||||||||||||||||| || || ||||| |||| |||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaa 2455918  T
Q  131 g 131  Q
    |    
T  2455919 g 2455919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 32975987 - 32976087
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||| ||||| | | || ||| || | | |||||  |||||||| |||| ||||| |||||| ||||| || |||||||||||||||||    
T  32975987 ttttcataagctatcctggaatgattatagaagcacgctgaaaacagcttatggaaatgtcataagctgtttctataagctcttccaaacagtctcacaa 32976086  T
Q  131 g 131  Q
    |    
T  32976087 g 32976087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 37273143 - 37273240
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcac 128  Q
    ||||||||||||||| |||| | || ||||||| ||| | ||||| |||||||||||||| |||||||||||||||||| ||  ||||||||||||||    
T  37273143 ttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcac 37273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 43115065 - 43115165
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||| | ||||||| || |||| ||||||| ||| | ||||| | |||||||||||| |||||||||||||||||  || |||||||| ||||||||    
T  43115065 ttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaa 43115164  T
Q  131 g 131  Q
    |    
T  43115165 g 43115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 2923533 - 2923581
Alignment:
Q  78 acttatggacatgta-taagttgtttccataagttcatccaaacagtct 125  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  2923533 acttatggacatgtagtaagttgtttctataagttcttccaaacagtct 2923581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 36200110 - 36200176
Alignment:
Q  37 ataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgttt 102  Q
    |||||||||| || | |||||||||||| ||| | ||||| |||||||||||||| |||||||||||    
T  36200110 ataagctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataagttgttt 36200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 21574498 - 21574595
Alignment:
Q  31 tttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctca 127  Q
    ||||| |||||||| |||||| |||| ||||||| ||| | ||| |  |||||| |||||| ||||||||||| |||||| ||  |||||||||||||    
T  21574498 ttttttataagctaacatggagagcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaacagtctca 21574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 23785264 - 23785320
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggaca 88  Q
    |||||| ||||| ||||||| |||| ||||||||||| | ||||| |||||||||||    
T  23785264 ttttcacaagctctcatggagagcttatggaaacaagctgaaaacaacttatggaca 23785320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 26542546 - 26542646
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    |||||||||||||| ||||| || | ||||||| ||| | ||||| | |||| ||||| | ||||||||||||  |||| || |||||||||||| ||||    
T  26542546 ttttcataagctattatggagagtttatggaaataagttgaaaacaagttatagacatatcataagttgtttcagtaagctcttccaaacagtcttacaa 26542645  T
Q  131 g 131  Q
    |    
T  26542646 g 26542646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 41724261 - 41724301
Alignment:
Q  72 aaaacgacttatggacatgt-ataagttgtttccataagtt 111  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  41724261 aaaacaacttatggacatgtcataagttgtttccataagtt 41724301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 23819098 - 23819197
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||| || | |||| || |||| ||||| ||||| |||||||||||||| ||||| ||||| | |||  || |||||||||||||||||    
T  23819098 ttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 27123407 - 27123313
Alignment:
Q  38 taagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||| ||||| |||| ||||||| ||| | ||||| |||||  ||||||| |||||||||||||||||| ||   ||||||||||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 27123313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 4798627 - 4798527
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||||||||||| |||| |||| ||| ||| ||| |||||||  |||||| |||||| | |||  ||||||||||| || ||| |||||||||||||    
T  4798627 ttttcataagctatcttggagagcttatgcaaataagctcaaaacagcttatgtacatgtcagaagccgtttccataagctcttcctaacagtctcacaa 4798528  T
Q  131 g 131  Q
    |    
T  4798527 g 4798527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 53673719 - 53673642
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataa 108  Q
    ||||||||||||||| |||| |||| ||| ||| ||| | ||||| |||||||||||| | ||| |||||||||||||    
T  53673719 ttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataa 53673642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 19304934 - 19305034
Alignment:
Q  31 tttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcaca 129  Q
    ||||| |||||||||  |||| || | ||||||||||| | ||||| |||||||||||||| ||||| |||||||| || |||  ||| ||| |||||||    
T  19304934 ttttttataagctattttggagagttaatggaaacaagctgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcaca 19305033  T
Q  130 a 130  Q
    |    
T  19305034 a 19305034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 27140478 - 27140560
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttcc 104  Q
    |||||||||||||| ||||||||||||||| |||| ||| ||| ||| | ||||| |||||||||||||| ||||| |||||||    
T  27140478 tataagctgttttt-ataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttcc 27140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 32515500 - 32515402
Alignment:
Q  34 ttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||||||||||||| |||| || || | ||| | ||||| |||||| ||||||| ||| | |||||||||||| ||  |||||||||||||||||    
T  32515500 ttcataagctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaag 32515402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 28689508 - 28689432
Alignment:
Q  37 ataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttc 112  Q
    |||||||||| ||||||||| ||| ||| ||| | ||||| |||||||||||||| ||||| ||||||| |||||||    
T  28689508 ataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttc 28689432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 35080138 - 35080031
Alignment:
Q  24 taagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacag 122  Q
    |||||| |||||||| |||||||||||| ||||  | |||| ||| |||||||  |||||| |||||| |||||||| ||||||||| |  |||||| ||    
T  35080138 taagctttttttcatgagctatcatggagagcttgtcgaaataagctcaaaacagcttatgaacatgtcataagttg-ttccataagcttttccaaagag 35080040  T
Q  123 tctcacaag 131  Q
    |||||||||    
T  35080039 tctcacaag 35080031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 38578575 - 38578637
Alignment:
Q  70 tcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||||| ||||||| | |||| ||||||||||| ||||||||  ||||||||||||||||||    
T  38578575 tcaaaacaacttatgaatatgttataagttgttttcataagttagtccaaacagtctcacaag 38578637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 8130445 - 8130481
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaag 68  Q
    |||||||||||||||||||||| || |||||||||||    
T  8130445 ttttcataagctatcatggaaaacttatggaaacaag 8130481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 17420212 - 17420312
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgta-taagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||| |||||||||   |||| || ||||||| ||| | ||||| | ||||||||||||| |||||||||| |||||| || || ||||||||| ||||    
T  17420212 ttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaa 17420311  T
Q  131 g 131  Q
    |    
T  17420312 g 17420312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 33646021 - 33645921
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttc-atccaaacagtctcaca 129  Q
    ||||||||||||||| |||| |||| ||||||| ||  | ||||| |||||| ||||||| |||||||||||||||||| ||  ||||| ||||||||||    
T  33646021 ttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctccaaccagtctcaca 33645923  T
Q  130 ag 131  Q
    ||    
T  33645922 ag 33645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 6633934 - 6633975
Alignment:
Q  92 ataagttgtttccataagttcatccaaacagtctcacaagca 133  Q
    ||||||||||||||||| ||| |||| |||||||||||||||    
T  6633934 ataagttgtttccataaattcttccatacagtctcacaagca 6633975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 29574638 - 29574586
Alignment:
Q  80 ttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||||||| ||||| |||||||||||||||  | |||||||||||||||    
T  29574638 ttatggacatgtcataagctgtttccataagttctccgaaacagtctcacaag 29574586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 36537957 - 36538017
Alignment:
Q  72 aaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    ||||| ||||||| |||||| |||||||||||||||||||||   |||||| |||||||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaag 36538017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 25869327 - 25869251
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccata 107  Q
    |||||||| ||||||||||| || | ||||||| ||| | ||||| |||||||||||||| ||||||| ||||||||    
T  25869327 ttttcataggctatcatggagagtttatggaaataagctgaaaacaacttatggacatgtcataagttatttccata 25869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 13000484 - 13000385
Alignment:
Q  33 tttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||| || ||||| |||||| ||||||| ||| | ||||| |||| ||||||||| |||||||||| ||||||  || | |||| |||||||||||    
T  13000484 tttcataaactgtcatgcaaagcttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaag 13000385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 11569527 - 11569418
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaac 120  Q
    ||||||||||||| |||||||||||||||| || |  || ||| ||| | ||||| ||||||| |||||| ||||| |||||||||||| ||    ||||    
T  11569527 tataagctgtttt-cataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaac 11569429  T
Q  121 agtctcacaag 131  Q
    |||||||||||    
T  11569428 agtctcacaag 11569418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 2488009 - 2487969
Alignment:
Q  91 tataagttgtttccataagttcatccaaacagtctcacaag 131  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  2488009 tataagttgttttcataagttctcccaaacagtctcacaag 2487969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 7714251 - 7714351
Alignment:
Q  32 ttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataagttcatccaaacagtctcacaa 130  Q
    ||||||| ||||||| |||| |||||||| ||| ||| | |||||  || || ||||| | |||||||||||||| ||| |  |||||||||||||||||    
T  7714251 ttttcatgagctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagttgtttccacaagcttttccaaacagtctcacaa 7714350  T
Q  131 g 131  Q
    |    
T  7714351 g 7714351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 4293 - 4207
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggac-atgtataagttgtttccataa 108  Q
    |||||||||||||  |||||||||  | ||||||| | ||||||||||| ||||| |||||| ||| ||| |||||||||||||||||    
T  4293 tataagctgtttta-ataagctatgctagaaagcttacggaaacaagattaaaacaacttattgacaatgcataagttgtttccataa 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 12775 - 12687
Alignment:
Q  22 tataagctgtttttcataagctatcatggaaagctcatggaaacaagatcaaaacgacttatggacatgt-ataagttgtttccataag 109  Q
    |||||||||||||  | |||||||| | || |||| |||||   ||| | ||||| |||||||||||||| ||||||||||||||||||    
T  12775 tataagctgttttcaagaagctatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataagttgtttccataag 12687  T

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