View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7368_high_1 (Length: 249)
Name: NF7368_high_1
Description: NF7368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7368_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 38482740 - 38482953
Alignment:
| Q |
14 |
atatcaaagaaaaagaacccatataatgtatcttagacataaaatgtagatacacgtgttaagtaacgcgccnnnnnnngtctatcatttcccgcgatga |
113 |
Q |
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| T |
38482740 |
atatcaaagaaaaagaacccatatactgtatcttagacataaaatgtagatacacgtgttaagtaacgcgcctttttttgtctatcatttcccgcgatga |
38482839 |
T |
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| Q |
114 |
ccgttactctcacaagaccacttctcattcttttctctctaactaactaaactaaccaacaacaaaatcataacacacagtcacactctctcttcccaac |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
38482840 |
ccgttacactcacaagaccacttctcattcttttctctctaactaactaaactaaccaataacagaatcataacacacagtcacactctctcttcccaac |
38482939 |
T |
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| Q |
214 |
tccaatgacatgcc |
227 |
Q |
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|||||||||||||| |
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| T |
38482940 |
tccaatgacatgcc |
38482953 |
T |
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