View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_high_2 (Length: 502)
Name: NF7369_high_2
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 45667197 - 45667655
Alignment:
| Q |
7 |
tttggtggtgatggtgaagatcaggtactattagatgtaaaaactaattacactagtgtaactgactaacaaactggtgtaattaattaactagtgtaac |
106 |
Q |
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| T |
45667197 |
tttgctggtgatggtgaagatcaggtactattagatgtaaaaactaattacactagtgtaactgactaacaaactggtgt-----------------aac |
45667279 |
T |
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| Q |
107 |
taacttttacatttaatatgtaaaatttgatattttgggttcttcaaatgttacttgtttatacagtagacctgtatcgttttatgcataattaaaagtt |
206 |
Q |
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| T |
45667280 |
taacttttacatttaatatgtaaaatttgatattttgggttcttcaaatgttacttgtttatacagtagacctgtatcgttttttgcataattaaaagtt |
45667379 |
T |
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| Q |
207 |
agcttttgaaactcaaaattttatagcagaaacttgtcagagtaaggtataaaagagaaaaaataacaccgttgttgagatacacgacttgaacttactt |
306 |
Q |
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| T |
45667380 |
agcttttgaaactcaaaattttatagcagaaacttgtcagagtaaggtataaaagagaaaaaataacaccgttgttgagatacacgacttgaacttactt |
45667479 |
T |
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| Q |
307 |
gacattcattcatgtgatgaaatgagtatttactactttatttgcatatgttgtctggtaagataggatgcagaactgcaatttagaggacagcgtattt |
406 |
Q |
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| T |
45667480 |
gacattcattcatgtgatgaaatgagtatttactactttatttgcatatgttgtctggtaagataggatgcagaactgcaatttagaggacagcgtattt |
45667579 |
T |
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| Q |
407 |
gggcagctgcaatggaagatttgatgtcaaagggaatgcattttgcaaatcaagctcttctttccggatgttccgc |
482 |
Q |
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| T |
45667580 |
gggcagctgcaatggaagatttgatatcaaagggaatgcattttgctaatcaagctcttctttccggatgttccgc |
45667655 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 37972826 - 37972757
Alignment:
| Q |
383 |
tgcaatttagaggacagcgtatttgggcagctgcaatggaagatttgatgtcaaagggaatgcattttgc |
452 |
Q |
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| T |
37972826 |
tgcaattcagaggacagcgcatttggttggctgcagtggaggatttgatgtcaaaaggaatgcgttttgc |
37972757 |
T |
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