View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7369_high_3 (Length: 456)
Name: NF7369_high_3
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 28074095 - 28074523
Alignment:
| Q |
17 |
attttatctttttatcaatcaatatgaattttatgaaatttttctctccatcaagctctcaagcatatctaccaacnnnnnnnnnntctcaagcttattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28074095 |
attttatctttttatcaatcaatatgaattttatgaaatttttctctccatcaagctctcaagcatatctaccaacaaaaaaaaaatctcaagcttattt |
28074194 |
T |
|
| Q |
117 |
tacctatgagataaatcttcagctgtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgacttaattag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28074195 |
tacctatgagataaatcttcagctgtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgacttaattag |
28074294 |
T |
|
| Q |
217 |
tgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcagagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28074295 |
tgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcagagc |
28074394 |
T |
|
| Q |
317 |
cctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatagaaaaaatgttgtttcattttttctataacttctc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28074395 |
cctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatagaaaaaatgttgtttcattttttctataacttctc |
28074494 |
T |
|
| Q |
417 |
tacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28074495 |
tacattgcatatatatctccttgcttcat |
28074523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 27916366 - 27916783
Alignment:
| Q |
16 |
aattttatctttttatcaatcaatatgaattttatgaaatttttctctccatcaagctctcaagcatat--ctaccaacnnnnnnnnnntctcaagctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| || |||| ||||||||||| |
|
|
| T |
27916366 |
aattttatctttttatcaatcaatatgaattttaagaaattcttctctccatcaagctctaaagcatatatctgccaa----aacaagctctcaagctta |
27916461 |
T |
|
| Q |
114 |
ttttacctatgagataaatcttcagct--gtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgactta |
211 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
27916462 |
ttttac-----------atcttcatctctgtcatcctgtgatttgtaactcggtttctcttgtagaaggtaaaaaagtaaagattcaaggacaggactta |
27916550 |
T |
|
| Q |
212 |
attagtgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgc |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
27916551 |
attagtgacagaacagtaaattgcttaaccaatgtggaggcattttcactcgaagctaaagacattgaagaagtcacaactcttttttcaaaactcttgc |
27916650 |
T |
|
| Q |
312 |
agagccctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatagaaaaaatgttgtttcattttttctataac |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| || |
|
|
| T |
27916651 |
ggagccctcatgttcaacaagtcataaggtcattccttccttccattaccttgttgtgtttctgtcgatagaaaaaatgttgtttca-tttttctattac |
27916749 |
T |
|
| Q |
412 |
ttctctacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27916750 |
ttctctatattgcatatatatctccatgcttcat |
27916783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 28034719 - 28035143
Alignment:
| Q |
19 |
tttatctttttatcaatcaatatgaattttatgaaatttttctctccatcaa-gctctcaagcatatctaccaacnnnnnnnnnntctcaagcttatttt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
28034719 |
tttatctttttatcaatcaaaatgaatttgaagaaatttttctctccatcaaagctt------atatctaccaaaatataaaatctctcaagcttatttt |
28034812 |
T |
|
| Q |
118 |
acctatgagataaatcttcagct--gtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgacttaatta |
215 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| || ||||| ||||| || |
|
|
| T |
28034813 |
acctatgagataaatcttcatctctgtcatcctgtgatttgtaactcggtttctcttgtagacggtaaaaaagtaaagattcgaggacatggcttaacta |
28034912 |
T |
|
| Q |
216 |
gtgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcagag |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
28034913 |
gtgacagaacagtaaaatgcttaaccaatgtggaggcattttcactcgacgctaaagacattgaggaagtcacaactctgttttcaagattcttgcggag |
28035012 |
T |
|
| Q |
316 |
ccctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatag-aaaaaatgttgtttcattttttctataacttc |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||| ||||| || | || |||||| | || ||||||||||||||||||| |||||||||||| |
|
|
| T |
28035013 |
ccctcacgttcaacaagtcataaggtcattcattcactccgttaccatgttttgcatctgtcgagagaaaaaaatgttgtttcatttgttctataacttc |
28035112 |
T |
|
| Q |
415 |
tctacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |
|
|
| T |
28035113 |
tctacattgcatatatatctccattcttcat |
28035143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 28016961 - 28017375
Alignment:
| Q |
17 |
attttatctttttatcaatcaatatgaattttatgaaatttttctctccatcaagctctcaagcatat--ctaccaacnnnnnnnnnntctcaagcttat |
114 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| || ||| | |
|
|
| T |
28016961 |
attttatctttttgtcaatcaatattaattttaagaagtttttctctccatcaagctctcaagcatatatctaccaa-aaaaaaaagctcttaaactttt |
28017059 |
T |
|
| Q |
115 |
tttacctatgagataaatcttcagctgtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgacttaatt |
214 |
Q |
| |
|
||||| | |||||||||||| | ||||||| | |||||||||||||||||||| || |||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
28017060 |
tttactt--gagataaatctttatatgtcatcttgtgatttgtaactcggtttcttttttagaaggtaaagaagtaaagattcaaggacatggcttaact |
28017157 |
T |
|
| Q |
215 |
agtgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcaga |
314 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||||| |||| || | |
|
|
| T |
28017158 |
agtgacagaacagtaaaatgcttaaccgatgtggaggcatttttactcgacgctaaagctattgaagaagtcacaactcattttgcaagactcttacaaa |
28017257 |
T |
|
| Q |
315 |
gccctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatagaaaaaatgttgtttcattttttctataacttc |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28017258 |
atcctcacgttcaacaagtcataaggtcattctttcctaccattaccttgttgtgtttctgtcgatagaaaaaatgttgtttcattttttctataacttc |
28017357 |
T |
|
| Q |
415 |
tctacattgcatatatat |
432 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
28017358 |
tctatattgcatatatat |
28017375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 103 - 406
Target Start/End: Original strand, 28047005 - 28047310
Alignment:
| Q |
103 |
tctcaagcttattttacctatgagataaatcttcagct--gtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaag |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| || |||||||| || ||| |||||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
28047005 |
tctcaagcttattt-acctatgacataaatcttcatctctgtcatcctgtggtttataactcggtttctcttgtagaaagtaaaaatgtaaagattcaag |
28047103 |
T |
|
| Q |
201 |
aacatgacttaattagtgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttc |
300 |
Q |
| |
|
||| | ||||| |||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
28047104 |
gacagggcttaactagtgacagaacggtaaaatgcttaaccaatgttgaggcattttcactcgacgctaaagacattgaagaagtcacaactcattttgc |
28047203 |
T |
|
| Q |
301 |
aagattcttgcagagccctcgcgttcaacaagtcataaggtcattccttccttccattaccttgatgtgtttctgtcaatag-aaaaaatgttgtttcat |
399 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
28047204 |
aagattcttgcggagccctcgcgttcaacaagtcataaggtcatttattacttccattacctttttgtgtttctgtcgatagaaaaaaatgttgtttcat |
28047303 |
T |
|
| Q |
400 |
tttttct |
406 |
Q |
| |
|
||||||| |
|
|
| T |
28047304 |
tttttct |
28047310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 345
Target Start/End: Original strand, 28001455 - 28001689
Alignment:
| Q |
112 |
tattttacctatgagataaatcttcagc--tgtcatcctttgatttgtaactcggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgact |
209 |
Q |
| |
|
||||||| |||||||||||||||||| | | ||||| | ||||||||||| || ||||||| ||||||||||| |||||||| |||||| | | || |
|
|
| T |
28001455 |
tattttatctatgagataaatcttcatccctttcatcgtgtgatttgtaacacg-tttctctcgtagaaggtaaaaaagtaaagcttcaaggatggggct |
28001553 |
T |
|
| Q |
210 |
taattagtgacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattctt |
309 |
Q |
| |
|
||| |||| |||| |||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||| || |||||| |||| || ||||||| |
|
|
| T |
28001554 |
taactagtaccagatcagtaaaatgcttaaccaatgtggaggcattttcactccgcgttaaagacattgaagaactcgcaactctttttgcaggattctt |
28001653 |
T |
|
| Q |
310 |
gcagagccctcgcgttcaacaagtcataaggtcatt |
345 |
Q |
| |
|
|| |||||||| | |||| ||||||||||||||| |
|
|
| T |
28001654 |
gcggagccctcacactcaaggagtcataaggtcatt |
28001689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 28090941 - 28091068
Alignment:
| Q |
218 |
gacagaacagtaagatgcttaaccaatttggaggcattttcactcgacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcagagcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |||| ||||| |
|
|
| T |
28090941 |
gacagaacagtaagatgcttaaccaatgtggaggcattttcacttcgtgctaaagacattgaagaagtcacaactctcttcgcaagatttttgcggagcc |
28091040 |
T |
|
| Q |
318 |
ctcgcgttcaacaagtcataaggtcatt |
345 |
Q |
| |
|
|||| |||||| ||| ||||||||||| |
|
|
| T |
28091041 |
ctcgtgttcaaggagttataaggtcatt |
28091068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 28001777 - 28001838
Alignment:
| Q |
384 |
aaaaatgttgtttcattttttctataacttctctacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
28001777 |
aaaaatattgtttcattttttctataacttctctaccttgcatatgtatctccatgcttcat |
28001838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 28091165 - 28091223
Alignment:
| Q |
387 |
aatgttgtttcattttttctataacttctctacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| |
|
|
| T |
28091165 |
aatgttgtttcattttttctataacttctttacatagcatatatatctccatgtttcat |
28091223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 27917444 - 27917483
Alignment:
| Q |
387 |
aatgttgtttcattttttctataacttctctacattgcat |
426 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27917444 |
aatgttgtttcattttttctataacttttctacattgcat |
27917483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 163 - 341
Target Start/End: Original strand, 1439575 - 1439753
Alignment:
| Q |
163 |
ggtttctcttgtagaaggtaagcaagtaaagattcaagaacatgacttaattagtgacagaacagtaagatgcttaaccaatttggaggcattttcactc |
262 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||| ||| | || | ||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
1439575 |
ggtttctcttgcagaaggtaaaaaagtaaagcttcaaggacaaggattgactagtgacagaacagtaagatgcttaaccaatgttgaggcattttcactc |
1439674 |
T |
|
| Q |
263 |
gacgctaaagacattgaagaagtcacaactcgtttttcaagattcttgcagagccctcgcgttcaacaagtcataaggt |
341 |
Q |
| |
|
||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||| |||||| ||| ||||||| |
|
|
| T |
1439675 |
cgcgctaaagacattgaagaagtgaccactcttttcgcaagattcttgcggagccctcgtgttcaaggagttataaggt |
1439753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 1439851 - 1439909
Alignment:
| Q |
387 |
aatgttgtttcattttttctataacttctctacattgcatatatatctccttgcttcat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1439851 |
aatgttgtttcattttttctataacttctctacattgcatatatatctccatgcttcat |
1439909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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