View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7369_high_9 (Length: 284)
Name: NF7369_high_9
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_high_9 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 41943025 - 41943288
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41943025 |
tcaccaattcttataattagcaactacaagaaaaa-taataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacaac |
41943123 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttcctagccgaataacctctaaatttatacgcatcatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41943124 |
ataa-tctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttcctagccgaataacctctaaatttatacgcatcatt |
41943222 |
T |
|
| Q |
201 |
cttcgctccgcaaactcaaatccaatcggccaggaaaaccacaaaaacatgtttctcaaatgtgtt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41943223 |
cttcgctccgcaaactcaaatccaatcgaccaggaaaaccacaaaaacatgcttctcaaatgtgtt |
41943288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 3295409 - 3295290
Alignment:
| Q |
35 |
aataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaa |
133 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
3295409 |
aataataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcat-aatctatcagtttcacttaaatcatggtcaa |
3295311 |
T |
|
| Q |
134 |
gactagagcccttaccttaga |
154 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
3295310 |
gactagagctcttaccttaga |
3295290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 10344738 - 10344885
Alignment:
| Q |
88 |
caaattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttac--------cttagatactctccttcctagccgaataacc |
179 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
10344738 |
caaattcaacatcataa-tctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttagatgctctccttcctaatcgaataacc |
10344836 |
T |
|
| Q |
180 |
tctaaatttatacgcatcattcttcgctccgcaaactcaaatccaatcg |
228 |
Q |
| |
|
| ||||||||||||||||| ||||||||| || ||||||| |||||||| |
|
|
| T |
10344837 |
tttaaatttatacgcatcactcttcgctctgctaactcaactccaatcg |
10344885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10336091 - 10336177
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatc |
88 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336091 |
tcaccaattcttataatttgcaactacaagaaaa-ataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc |
10336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 31519152 - 31519254
Alignment:
| Q |
49 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccctta |
147 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| || |||||||||||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
31519152 |
ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcat-aacctatcattttcaattaaatcatggtcaagactagagccttta |
31519250 |
T |
|
| Q |
148 |
cctt |
151 |
Q |
| |
|
|||| |
|
|
| T |
31519251 |
cctt |
31519254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 9818185 - 9818337
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818185 |
tcaccaattcttataattagcaactacaagaaaa-ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
9818283 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
155 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818284 |
at-aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
9818337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 42077479 - 42077719
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42077479 |
tcaccaattcttataattaacaactacaagaaaa-ataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaaattcaacatc |
42077577 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttcctagccgaataacctctaaatttatacgcatcatt |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
42077578 |
at-aatctatcattctcatttaaacatggtcaagactagaacccctac----------------------cgaataacctctaaatttatacgcatcatt |
42077654 |
T |
|
| Q |
201 |
cttcgctccgcaaactcaaatccaatcggccaggaaaaccacaaaaacatgtttctcaaatgtgtt |
266 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42077655 |
cttcactccgcaaactcaaattcaatcgaccaggaaaaccacaaaaacat-cttctcaaatgtgtt |
42077719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 21231856 - 21232007
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21231856 |
tcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
21231954 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttaga |
154 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
21231955 |
at-aatctatcattttcatttaaacacggtcaagactagagccattaccttaga |
21232007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 9881205 - 9881085
Alignment:
| Q |
32 |
aaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatt-taaacatggt |
130 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||||||| |||| | |||||||||||||| || ||||| ||||||| ||||||||| ||||||| | |
|
|
| T |
9881205 |
aaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcat-aatctattattttcattcaaaacatgat |
9881107 |
T |
|
| Q |
131 |
caagactagagcccttacctta |
152 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
9881106 |
caagactatagcccttacctta |
9881085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
| Q |
52 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacct |
150 |
Q |
| |
|
||||| |||||||||||| | ||| |||||||||| |||||||| |||||||| |||||||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
24423320 |
aatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaa-ctatcattttcagttaaatcatggtcaagactagggtccttacct |
24423223 |
T |
|
| Q |
151 |
tag |
153 |
Q |
| |
|
||| |
|
|
| T |
24423222 |
tag |
24423220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 29115604 - 29115651
Alignment:
| Q |
57 |
tttcactcatccattaaatcaagaagcatatcaaattcaacatcataa |
104 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
29115604 |
tttcactcatccatcgaatcatgaagcatatcaaattcaatatcataa |
29115651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 10530148 - 10530300
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530148 |
tcaccaattcttataattagcaactacaagaaaa-ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
10530246 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
155 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530247 |
at-aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
10530300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 9745271 - 9745123
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9745271 |
tcaccaattcatataattatcaactacaagaaaaa-taataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaaattcaacatc |
9745173 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttacctt |
151 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9745172 |
at-aatctatcattttcctttaaacatggtcaagactagagcccttacctt |
9745123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 29587723 - 29587570
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatctttt-cactcatccattaaatcaagaagcatatcaaattcaacat |
99 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29587723 |
tcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatctttttcactcatccattaaatcaagaagcatatcaaattcaacat |
29587625 |
T |
|
| Q |
100 |
cataaatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga |
154 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
29587624 |
cat-aatctatcattttcattcaaatcatggtcaagactagagcccttaccttaga |
29587570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 13168000 - 13167881
Alignment:
| Q |
33 |
aaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
13168000 |
aaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcat-aatctatcattttcacttaaatcatggtc |
13167902 |
T |
|
| Q |
132 |
aagactagagcccttacctta |
152 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13167901 |
aagactagagcccttacctta |
13167881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 8311880 - 8311731
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaa-cacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacat |
99 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||| || ||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
8311880 |
tcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcatgtcaaattcaacat |
8311781 |
T |
|
| Q |
100 |
cataaatctatcattttcatttaaa-catggtcaagactagagcccttacc |
149 |
Q |
| |
|
||| ||||||| ||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
8311780 |
cat-aatctattattttcagttaaatcatggtcaagactagagcacttacc |
8311731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 46002795 - 46002887
Alignment:
| Q |
46 |
acaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagacta |
138 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
46002795 |
acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatca-caacctattattttcatttaaatcatgatcaagacta |
46002887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
| Q |
52 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcattta-aacatggtcaagactagagccctta |
147 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||| || ||||| || |||| |||||||| || | |||| |||||||||||||||||| |
|
|
| T |
31211188 |
aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcat-aacctattattttcatctagatcatgatcaagactagagccctta |
31211093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 31654582 - 31654726
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31654582 |
tcaccaattcttataattagcaactacaagaaaa-ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaatccaacatc |
31654680 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagccctta |
147 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654681 |
at-aatctatcattttcatttaaacatggtcaagactagagccctta |
31654726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 51443533 - 51443650
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51443533 |
tcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
51443631 |
T |
|
| Q |
101 |
ataaatctatcattttcatt |
120 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
51443632 |
at-aatctatcattttcatt |
51443650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 13380229 - 13380378
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||| || |
|
|
| T |
13380229 |
tcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatcca-tgaatcaagaagtatatcaaattcaacgtc |
13380326 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaa-catggtcaagactagagcccttacctta |
152 |
Q |
| |
|
|| || |||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13380327 |
at-aacctatcattttcacttaaatcatggtcaagactagaacccttacctta |
13380378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 15990178 - 15990418
Alignment:
| Q |
2 |
caccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatca |
101 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15990178 |
caccaattcttataattatcaactacaagaaaat-taataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaattcaacgtca |
15990276 |
T |
|
| Q |
102 |
taaatctatcattttcatttaaa-catggtcaagactagagcccttaccttagata--------ctctccttcctagccgaataacctctaaatttatac |
192 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
15990277 |
t-aatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttagatgctctccttcttagtcgaataacctttaaatctatac |
15990375 |
T |
|
| Q |
193 |
gcatcattcttcgctccgcaaactcaaatccaatcggccagga |
235 |
Q |
| |
|
|||||| ||||||||| || ||||||| || ||||| |||||| |
|
|
| T |
15990376 |
gcatcactcttcgctctgctaactcaactcgaatcgaccagga |
15990418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 29453795 - 29453643
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaa-cacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacat |
99 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
29453795 |
tcaccaattcatataattatcaactacaagaaaat-taataaaaacataataaatcttttcactcatccatgaa-tcaagaagcatatcaaattcaatgt |
29453698 |
T |
|
| Q |
100 |
cataa---atctatcattttcatttaaacatggtcaagactagagcccttacctt |
151 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
29453697 |
cataatctatctatcattttcatttaaacatggtcaaaactagagtccttacctt |
29453643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40888698 - 40888848
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||| | |||||||||||||||||||||| | ||||||||||||||| ||||||||| || |
|
|
| T |
40888698 |
tcaccaattcatataattatcaactacaagaaaat-taataaaatataataaatcttttcactcatcca-tgaatcaagaagcatattaaattcaacgtc |
40888795 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaa-catggtcaagactagagcccttaccttag |
153 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
40888796 |
at-aatctatcattttcaattaaatcatggccaagactagggcccttaccttag |
40888848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
| Q |
49 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccctta |
147 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
52641386 |
ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcat-aatctatcattttcaattaaatcatggtcaaaactagagccctta |
52641484 |
T |
|
| Q |
148 |
cctta |
152 |
Q |
| |
|
||||| |
|
|
| T |
52641485 |
cctta |
52641489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 19544714 - 19544811
Alignment:
| Q |
48 |
aataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcattta-aacatggtcaagactagagccctt |
146 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| || |||||| ||||||||| | |||| ||| ||||||||||||| |
|
|
| T |
19544714 |
aataaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcat-aacctatcactttcatttagatcatgatcatgactagagccctt |
19544811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 11650592 - 11650683
Alignment:
| Q |
61 |
actcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacctta |
152 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
11650592 |
actcatcaattgaatcaagaagcatatcaaattcaatatca-caaccaattattttcttttaaatcatggttaagactatagcccttacctta |
11650683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 108003 - 107863
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
108003 |
tcaccaattcttataattagcaactacaacaaaaa-taataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaaattcaacatc |
107905 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcc |
143 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107904 |
at-aatctatcattttcatttaaacatggtcaagactagagcc |
107863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 27977158 - 27977323
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27977158 |
tcacaaattcatataattatcaactacaagaaaat-taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
27977256 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta |
168 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
27977257 |
at-aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta |
27977323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28063686 - 28063851
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28063686 |
tcacaaattcatataattatcaactacaagaaaat-taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
28063784 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta |
168 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
28063785 |
at-aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta |
28063851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 29046570 - 29046702
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29046570 |
tcaccaattctta--attagcaactacaagaaaa-ataataaaatacaataaatattttcaatcatccattaaatcaaggagcatatcaaattcaacatc |
29046666 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagact |
137 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
29046667 |
at-aatctatcattttcatttaaacatggtctagact |
29046702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 28497230 - 28497349
Alignment:
| Q |
32 |
aaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggt |
130 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
28497230 |
aaaattaataaaacataataaatcttttcactcattcatgaa-tcaagaagcatgtcgaattcaacatcataac-ctatcattttcaattaaatcatggt |
28497327 |
T |
|
| Q |
131 |
caagactagagcccttacctta |
152 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28497328 |
caagactagagcccttacctta |
28497349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 16131089 - 16131237
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||| | | |||||||||||||||||| || || ||||||||||| || |||||| |||| |
|
|
| T |
16131089 |
tcaccaattcatataattatcaactacaa-aaaaattaataaaatatagtaaatcttttcactcatctatgaa-tcaagaagcatgtcgaattcagcatc |
16131186 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaac-atggtcaagactagagcccttacctt |
151 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
16131187 |
ataac-ctatcattttcaattaaaccatggtcaagactagagcccttacctt |
16131237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 22403906 - 22403747
Alignment:
| Q |
2 |
caccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcat------------ccattaaatcaagaagcatatca |
89 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
22403906 |
caccaattcttataattattaacttcaagaaaat-taataaaacataataaatcttttcactcatccatcgaatcatccatcgaatcaagaagcatatca |
22403808 |
T |
|
| Q |
90 |
aattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacct |
150 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
22403807 |
aattcaacatcat-aatctattattttcagttaaatcatggtaaagactagagcccttacct |
22403747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 2170 - 2023
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170 |
tcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatc |
2072 |
T |
|
| Q |
101 |
ataaatctatcattttcatttaaacatggtcaagactagagcccttacct |
150 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2071 |
at-aatctattgttttcatttaaatatggtcaagactagagcccttacct |
2023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 2544 - 2663
Alignment:
| Q |
36 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||| ||||||||| |
|
|
| T |
2544 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcat-aacctatcattttcaattaaatcatggtcaaa |
2642 |
T |
|
| Q |
135 |
actagagcccttaccttagat |
155 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2643 |
actagagcccttaccttagat |
2663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 18927154 - 18927255
Alignment:
| Q |
48 |
aataaatcttttcactcatccattaaatc-aagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccct |
145 |
Q |
| |
|
||||||||| | ||| ||||| || |||| ||||||||||||||||||||| |||| || |||| |||||||| |||| ||||||||||| |||||||| |
|
|
| T |
18927154 |
aataaatctctccacccatccgttgaatccaagaagcatatcaaattcaacttcat-aacctattattttcatctaaataatggtcaagacaagagccct |
18927252 |
T |
|
| Q |
146 |
tac |
148 |
Q |
| |
|
||| |
|
|
| T |
18927253 |
tac |
18927255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 148404 - 148438
Alignment:
| Q |
1 |
tcaccaattcttataattagcaactacatgaaaaa |
35 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
148404 |
tcaccaattcttataattagcaactacaagaaaaa |
148438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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