View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_1 (Length: 763)
Name: NF7369_low_1
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 12 - 748
Target Start/End: Complemental strand, 44414319 - 44413582
Alignment:
| Q |
12 |
tgagatgaagaggctagggttttgaggtgaggagaagaaacgattctccgccacatgatggtgtttgagatctacggtggttacggcgtcgtctgattgg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44414319 |
tgagatgaagaggctagggttttgaggtgaggagaagaaacgattctccgccacatgatggtgtttgagatctacggtggttacggcgtcgtttgattgg |
44414220 |
T |
|
| Q |
112 |
aaatggaagaaggaagaacgaaacagagttgagaatgaaagtattgtttgttattacagaatgtgaaaaatgctctttcgtgtgctttgaacgcgcttaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44414219 |
aaatggaagaaggaagaacgaaacagagttgagaatgaaagtattgtttgttattacagaatgtgaaaaatgctctttcgtgtgctttgaacgcgcttaa |
44414120 |
T |
|
| Q |
212 |
gttcaacttcaaggcccaaacggattagcacgtgatgtggaatattgcacgtgccaataaatcaaacccccacttgaagatgggggtgtatattacaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44414119 |
gttcaacttcaaggcccaaacggattagcacgtgatgtggaatattgcacgtgccaataaatcaaacccccacttgaagatgggggtgtatattacaaaa |
44414020 |
T |
|
| Q |
312 |
ggaaagttatacagctgaacaaaattccgccgatgagcatcttgtattgcgccaaatcataaagatattttgaaattacatgtgtaatatggcagattga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44414019 |
ggaaagttatacagctgaacaaaattccgccgatgagcatcttgtattgcgccaaatcataaagatattttgaaattacatgtgtaatatggcagattga |
44413920 |
T |
|
| Q |
412 |
tgnnnnnnnnnattggatgtcagtgtaaatctgttttacactgtcagtgcatatcggttaaactcaaaaacaaatgtgacatgttagcctaaatcgtaca |
511 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44413919 |
tgtttttttttattggatgtcagtgtaaatctgttttacactgtcattgcatattggttaaactcaaaaacaaatgtgacatgttagcctaaatcgtaca |
44413820 |
T |
|
| Q |
512 |
ctattaacaatcaagactcgcttagagcaggttgggtggcacaaactgagttctgaaatatggtttttcctcgtgcttcccctatatttttcacaaactc |
611 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44413819 |
ctatgaacaatcaagactcgcttcgagcaggttgggtggcacaaactgagttctgaaatatggtttttcctcgtgcttcccctatatttttcacaaactc |
44413720 |
T |
|
| Q |
612 |
gtatgcacacacaaaattcataataatcccatccaagtgattgcaatgtaccaaattctgagattgcttggt-aaaagtttagttattttttccttctta |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44413719 |
gtatgcacacacaaaattcataataatcccatccaagtgattgcaatgtaccaaattctgagattgcttggtaaaaagtttagttattttttccttctta |
44413620 |
T |
|
| Q |
711 |
ccccaaaattatataaatataaatataaacttgtttgt |
748 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44413619 |
ccccaaaattatataaatataaatataaacttgtttgt |
44413582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 2556331 - 2556384
Alignment:
| Q |
496 |
tagcctaaatcgtacactattaacaatcaagactcgcttagagcaggttgggtg |
549 |
Q |
| |
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|||||||||| | ||| |||||||||||||||||| |||||| || |||||||| |
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|
| T |
2556331 |
tagcctaaattgcacagtattaacaatcaagactcacttagaacatgttgggtg |
2556384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 30073598 - 30073530
Alignment:
| Q |
344 |
atgagcatcttgtattgcgccaaatcataaagatattttgaaattacatgtgtaatatggcagattgatg |
413 |
Q |
| |
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|||||||||||||||| |||||| ||| | |||||||||||||||| ||| | |||||| ||||||||| |
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| T |
30073598 |
atgagcatcttgtattccgccaa-tcacagagatattttgaaattagttgtatgatatggtagattgatg |
30073530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2185893 - 2185930
Alignment:
| Q |
12 |
tgagatgaagaggctagggttttgaggtgaggagaaga |
49 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||| |
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| T |
2185893 |
tgagatgaagaagttagggttttgaggtgaggagaaga |
2185930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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