View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7369_low_11 (Length: 434)

Name: NF7369_low_11
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7369_low_11
NF7369_low_11
[»] chr1 (4 HSPs)
chr1 (1-410)||(8436399-8436808)
chr1 (194-406)||(10511005-10511217)
chr1 (223-326)||(25001063-25001166)
chr1 (356-406)||(13430777-13430827)
[»] scaffold0010 (2 HSPs)
scaffold0010 (194-351)||(153094-153249)
scaffold0010 (356-406)||(153001-153051)
[»] chr3 (2 HSPs)
chr3 (194-388)||(43377010-43377208)
chr3 (210-312)||(48757026-48757127)
[»] chr7 (3 HSPs)
chr7 (206-388)||(43974976-43975159)
chr7 (196-278)||(33493955-33494037)
chr7 (223-300)||(10227078-10227155)
[»] chr8 (2 HSPs)
chr8 (237-326)||(42653958-42654047)
chr8 (223-380)||(37505656-37505811)
[»] chr4 (1 HSPs)
chr4 (192-311)||(29567451-29567570)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 8436808 - 8436399
Alignment:
Q  1 cttctcgaccacatccaaagaaaagacattattgatgaagttaaaaaacttgcaacttaatttgaaaggatttcaacaactcaggtatcaacttggtagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8436808 cttctcgaccacatccaaagaaaagacattattgatgaagttaaaaaacttgcaacttaatttgaaaggatttcaacaactcaggtatcaacttggtagg 8436709  T
Q  101 ttggcaaaagactgctcaatctaagaatatgtgtttggtgcccacattctgtctcattctgccactataggttctccaacttgaaattccgttagagcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8436708 ttggcaaaagactgctcaatctaagaatatgtgtttggtgcccacattctgtctcattctgccactataggttctccaacttgaaattccgttagagcat 8436609  T
Q  201 cagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8436608 cagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaact 8436509  T
Q  301 gttctcgcaggggaacacgttcttgcgcagtgctatgtcagacaaaacaaacaacgagagagaaaagaggaaatgaaaagaaaatatactatatgaagtt 400  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8436508 gttctcgcaggggaacacgttcttgtgcagtgctatgtcagacaaaacaaacaacgagagagaaaagaggaaatgaaaagaaaatatactatgtgaagtt 8436409  T
Q  401 tatggtagac 410  Q
    ||||||||||    
T  8436408 tatggtagac 8436399  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 194 - 406
Target Start/End: Complemental strand, 10511217 - 10511005
Alignment:
Q  194 agagcatcagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttg 293  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10511217 agagcattagcaacacttgttctacctattgttcttaaaatacaagaacataaaattttgttctaggcattggaggagaatgacatggaaggacaggttg 10511118  T
Q  294 gagaactgttctcgcaggggaacacgttcttgcgcagtgctatgtcagacaaaac--aaacaacgagagagaaaagaggaaatgaaaagaaaatatacta 391  Q
    ||||||||||||||   ||||||||||||||  |||||| | ||| ||| |||||  |||||| |||||||  ||||||||| |||||||||||||| ||    
T  10511117 gagaactgttctcgtgagggaacacgttctt--gcagtgttgtgttagagaaaacaaaaacaaggagagagggaagaggaaaggaaaagaaaatataata 10511020  T
Q  392 tatgaagtttatggt 406  Q
    | ||||||| |||||    
T  10511019 tgtgaagttcatggt 10511005  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 25001063 - 25001166
Alignment:
Q  223 tgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgttctcgcaggggaacacgttc 322  Q
    ||||||||| | ||||||||| |||||||||||||||| ||| ||||||||||| ||||||  |||||||||||||||||||||  || |||||| ||||    
T  25001063 tgttcttaagacacaagaacagagaattttgttctaggtattggaggagaatgatatggaaatacaggttggagaactgttctcctagaggaacaagttc 25001162  T
Q  323 ttgc 326  Q
    ||||    
T  25001163 ttgc 25001166  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 13430777 - 13430827
Alignment:
Q  356 gagagagaaaagaggaaatgaaaagaaaatatactatatgaagtttatggt 406  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||| |||||    
T  13430777 gagagagagaagaggaaaggaaaagaaaatataatatgtgaagttcatggt 13430827  T

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Target: scaffold0010 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 153249 - 153094
Alignment:
Q  194 agagcatcagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttg 293  Q
    |||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  153249 agagcatcagcaacgcttgttctacctattgttcttaaaacacaagaacatagaattttgttctaggcattggaggagaatgacatggaagtacaggttg 153150  T
Q  294 gagaactgttctcgcaggggaacacgttcttgcgcagtgctatgtcagacaaaacaaa 351  Q
    |||||| ||||||| |||||||||| |||||  |||||||| | ||||| ||||||||    
T  153149 gagaaccgttctcgtaggggaacacattctt--gcagtgctgtttcagagaaaacaaa 153094  T

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Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 153051 - 153001
Alignment:
Q  356 gagagagaaaagaggaaatgaaaagaaaatatactatatgaagtttatggt 406  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||| |||||    
T  153051 gagagagagaagaggaaaggaaaagaaaatataatatgtgaagttcatggt 153001  T

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Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 194 - 388
Target Start/End: Original strand, 43377010 - 43377208
Alignment:
Q  194 agagcatcagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttct---aggcattagaggagaatgacatggaaggacagg 290  Q
    ||||||||| ||||| | ||||||  |||||||||||||| ||| |||||||||||||||||||   ||||||| |||||||||||||||||||||||||    
T  43377010 agagcatcaacaacagttgttctatctattgttcttaaaacacatgaacatagaattttgttcttctaggcattggaggagaatgacatggaaggacagg 43377109  T
Q  291 ttggagaactgttctcgcaggggaacacgttcttgcgcagtgctatg-tcagacaaaac--aaacaacgagagagaaaagaggaaatgaaaagaaaatat 387  Q
    ||||||||| ||||||| ||| ||||||||||||  | ||||||||| | ||| |||||  |||||| |||||||| ||||| ||| ||||| |||||||    
T  43377110 ttggagaaccgttctcgtaggtgaacacgttctt--ggagtgctatgttaagagaaaacaaaaacaaggagagagagaagagaaaaggaaaataaaatat 43377207  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 48757026 - 48757127
Alignment:
Q  210 tggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgttctcgca 309  Q
    ||||||||| ||||||  |||||| ||||||||| | | ||||||||||||||||  ||||||||||| ||||| |||||||||||||||  ||||||||    
T  48757026 tggttctacatattgtcattaaaacacaagaacacaaagttttgttctaggcattgtaggagaatgacctggaa-gacaggttggagaaccattctcgca 48757124  T
Q  310 ggg 312  Q
    |||    
T  48757125 ggg 48757127  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 388
Target Start/End: Complemental strand, 43975159 - 43974976
Alignment:
Q  206 acactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgttct 305  Q
    |||| ||||||||  | |||||||| || ||||||| | | |||||||||||||| ||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  43975159 acaccggttctacacactgttcttataacacaagaatacaaaattttgttctaggtattggaggaaaatgacctggaa-gacaggttggagaaccgttct 43975061  T
Q  306 cgcaggggaacacgttcttgcgcagtgctatgtcagacaaaacaaacaac---gagagagaaaagaggaaatgaaaagaaaatata 388  Q
       ||||||||| ||||||||   ||||||||| ||||||||||||||||   |||||| |||||||||||  |||||||||||||    
T  43975060 tctaggggaacatgttcttgc-aggtgctatgtgagacaaaacaaacaacaaggagagataaaagaggaaagaaaaagaaaatata 43974976  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 33494037 - 33493955
Alignment:
Q  196 agcatcagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgaca 278  Q
    ||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  33494037 agcatcatcaacgccggttctacgtattgttcttaaaacacaagaacatagaattttgttctaggtattggaggagaatgaca 33493955  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 10227078 - 10227155
Alignment:
Q  223 tgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaact 300  Q
    ||||||||| | | ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10227078 tgttcttaagacataagaacataaaattttgttctaggcattggaggagaatgacatggaagtacaggttggagaact 10227155  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 42653958 - 42654047
Alignment:
Q  237 aagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgttctcgcaggggaacacgttcttgc 326  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||  ||| |||||| ||||||||    
T  42653958 aagaacaaagaattttgttctaggcattggaggagaatgacatggaagtacgggttggagaactgttcttccagaggaacaagttcttgc 42654047  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 37505811 - 37505656
Alignment:
Q  223 tgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgtt-ctcgcaggggaacacgtt 321  Q
    |||||||| |||||||||||| | |||||||||||| ||||| ||| ||| ||||||||  ||| | |||||||||| ||| ||| | ||||||||||||    
T  37505811 tgttcttacaatacaagaacacataattttgttctatgcatttgagaagagtgacatgg--ggataagttggagaaccgttcctctc-ggggaacacgtt 37505715  T
Q  322 cttgcgcagtgctatgtcagacaaaacaaa-caacgagagagaaaagaggaaatgaaaag 380  Q
    |||||   || ||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  37505714 cttgc-aggttctatgtcagacaaaacaaagcaaggagagagaaaagaggaaaagaaaag 37505656  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 29567451 - 29567570
Alignment:
Q  192 ttagagcatcagcaacactggttctacgtattgttcttaaaatacaagaacatagaattttgttctag-gcattagaggagaatgacatggaaggacagg 290  Q
    ||||||||||| |||| || ||||| | |||| ||||||||| |||| ||||||||||||||||||||  |||| ||||| |||| | ||| | ||||||    
T  29567451 ttagagcatcaacaacgctagttcttcatattcttcttaaaacacaataacatagaattttgttctagaccattggaggataatgtcttggca-gacagg 29567549  T
Q  291 ttggagaactgttctcgcagg 311  Q
    ||||||||| |||||| ||||    
T  29567550 ttggagaaccgttctcccagg 29567570  T

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