View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7369_low_13 (Length: 408)

Name: NF7369_low_13
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7369_low_13
NF7369_low_13
[»] chr4 (2 HSPs)
chr4 (19-391)||(105030-105401)
chr4 (28-352)||(165669-166004)
[»] scaffold0013 (2 HSPs)
scaffold0013 (28-144)||(91623-91739)
scaffold0013 (221-333)||(91410-91522)
[»] chr3 (2 HSPs)
chr3 (28-144)||(12136673-12136789)
chr3 (209-356)||(12136436-12136583)
[»] chr7 (2 HSPs)
chr7 (19-144)||(13053543-13053668)
chr7 (212-336)||(13053737-13053861)
[»] chr8 (7 HSPs)
chr8 (223-336)||(5720996-5721109)
chr8 (223-336)||(5688264-5688377)
chr8 (224-336)||(5653927-5654039)
chr8 (28-144)||(5688467-5688583)
chr8 (28-144)||(5721205-5721321)
chr8 (224-336)||(5668477-5668588)
chr8 (28-144)||(5668677-5668793)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 105030 - 105401
Alignment:
Q  19 gttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105030 gttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctg 105129  T
Q  119 attgcaccgctgaaggtttgaaggtataggcaattaacaacataacttgttaataagctttctcaatgacaagtattgaatgttaataaaggttaaactc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105130 attgcaccgctgaaggtttgaaggtataggcaattaacaacataacttgttaataagctttctcaatgacaagtattgaatgttaataaaggttaaactc 105229  T
Q  219 tctggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105230 tctggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttg 105329  T
Q  319 ttgtcgcttcaggcaagtgctattaaatttattgccataataaacatttagcttattgattacttaaattgat 391  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  105330 ttgtcgcttcaggcaagtgctattaaatttattgccataat-aacatttagcttattgattacttaaattgat 105401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 352
Target Start/End: Original strand, 165669 - 166004
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  165669 aacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtggaccttctctgatcaagaccaaggatggcaactttctgattgcaccg 165768  T
Q  128 ctgaaggtttgaaggta----------taggcaattaacaacataacttgttaataagctttctcaatgacaagt---attgaatgttaataaaggttaa 214  Q
    | ||||| |||||||||          ||||| || |||||  ||| ||| || ||||||||| ||||  ||||    |||  | |||||| ||||| ||    
T  165769 cagaaggattgaaggtaattaacaacataggctataaacaatgtaatttgatactaagctttcacaat--caagccgaattataagttaattaaggtaaa 165866  T
Q  215 actctctggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgt 314  Q
    | | |  | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  165867 attatgggttgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatat 165966  T
Q  315 cttgttgtcgcttcaggcaagtgctattaaatttattg 352  Q
    | || ||||||||||||||||| ||||| |||| ||||    
T  165967 cctgctgtcgcttcaggcaagtactattcaattaattg 166004  T

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Target: scaffold0013 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 91739 - 91623
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  91739 aacccttctggagattttaagagtatgtatcgtcatatttctaaaggttcatggaccttctccgatcaagaccatggatggcaagtttctgatagtaccg 91640  T
Q  128 ctgaaggtttgaaggta 144  Q
    | |||||||||||||||    
T  91639 cagaaggtttgaaggta 91623  T

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Target: scaffold0013; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 91522 - 91410
Alignment:
Q  221 tggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgtt 320  Q
    ||||||||||||||||| |||| ||||||||||| |||||||  | ||||||||||||||||||||| ||||||||||||||||| |||||| || ||||    
T  91522 tggtgtttcagtgttgtttactattatcaatgtttcctccagcaactgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatctcctgtt 91423  T
Q  321 gtcgcttcaggca 333  Q
    ||| |||||||||    
T  91422 gtcacttcaggca 91410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 12136789 - 12136673
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |    
T  12136789 aacccttcaggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaggtttctgattgtactg 12136690  T
Q  128 ctgaaggtttgaaggta 144  Q
    | |||||||||||||||    
T  12136689 cagaaggtttgaaggta 12136673  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 356
Target Start/End: Complemental strand, 12136583 - 12136436
Alignment:
Q  209 ggttaaactctctggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggt 308  Q
    ||||||| ||| | |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||    
T  12136583 ggttaaattcttttgtgtttcagtgttgcctacttttatcagtgttgcctccaaagattgtaggggaaaagatggaaccagaaaggttatatgattcagt 12136484  T
Q  309 caatgtcttgttgtcgcttcaggcaagtgctattaaatttattgccat 356  Q
     ||| || | ||||| |||||||||||| | | |||||||||| ||||    
T  12136483 taatatcctattgtctcttcaggcaagtacgactaaatttatttccat 12136436  T

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Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 13053543 - 13053668
Alignment:
Q  19 gttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctg 118  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||    
T  13053543 gttagagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggtgcgtggactttctccgatcaagaccatggatggcaagtttctg 13053642  T
Q  119 attgcaccgctgaaggtttgaaggta 144  Q
    |||||||||| || ||| ||||||||    
T  13053643 attgcaccgcagatggtctgaaggta 13053668  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 13053737 - 13053861
Alignment:
Q  212 taaactctctggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  13053737 taaactctctggtgtttcagtgttgtctacttttatcaatgttgcctcctgagattgtgggtgaaaatatggaaccagagaggttatatgattcagtcaa 13053836  T
Q  312 tgtcttgttgtcgcttcaggcaagt 336  Q
    | |  ||||||| ||||||| ||||    
T  13053837 tcttctgttgtcacttcaggtaagt 13053861  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 5721109 - 5720996
Alignment:
Q  223 gtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgt 322  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| |    
T  5721109 gtgttttagtgttgtctgcttttatcaatgttgcctccagagattgtgggggaaaaaatggaacctgaaaggttatatgattcagtcaatatcttgtttt 5721010  T
Q  323 cgcttcaggcaagt 336  Q
    | ||||||||||||    
T  5721009 ctcttcaggcaagt 5720996  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 5688377 - 5688264
Alignment:
Q  223 gtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgt 322  Q
    |||||| |||||||||| ||||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||| || |||| |    
T  5688377 gtgttttagtgttgtctgcttttatcaatgttgtctccggagattgtaggggaaaaaatggaacctgaaaggttatatgattccgtcaatatcatgtttt 5688278  T
Q  323 cgcttcaggcaagt 336  Q
    | ||||||||||||    
T  5688277 ctcttcaggcaagt 5688264  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 5654039 - 5653927
Alignment:
Q  224 tgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgtc 323  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | | ||||| |||||| |||||||||| |||||| |  |||||||    
T  5654039 tgtttcagtgttgtctacttttgtcaatgttgcctccaaagattgtgggggaaatggttgaacccgaaaggctatatgattcagtcaattttgtgttgtc 5653940  T
Q  324 gcttcaggcaagt 336  Q
     ||||||| ||||    
T  5653939 acttcaggaaagt 5653927  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 5688583 - 5688467
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    |||||||| ||||||||| |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| |    
T  5688583 aacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggaccttctctgatcaagatcatggatggcaggtttctgattgcactg 5688484  T
Q  128 ctgaaggtttgaaggta 144  Q
    | |||||||| ||||||    
T  5688483 cagaaggtttaaaggta 5688467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 5721321 - 5721205
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    |||||||| ||||||||| |||| ||| | |||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  5721321 aacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggacattctctgatcaagatcatggatggcaggtttctgattgcaccg 5721222  T
Q  128 ctgaaggtttgaaggta 144  Q
    | |||||||| ||||||    
T  5721221 cagaaggtttaaaggta 5721205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 5668588 - 5668477
Alignment:
Q  224 tgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgtc 323  Q
    ||||| |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||| || | || ||    
T  5668588 tgttttagtgttgtctgcttttatcgatgctgcctccggagattgtgggg-aaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttc 5668490  T
Q  324 gcttcaggcaagt 336  Q
     ||||||||||||    
T  5668489 tcttcaggcaagt 5668477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 5668793 - 5668677
Alignment:
Q  28 aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg 127  Q
    |||||||| ||||||| | |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| |||||||||  |||||| |||||||| |    
T  5668793 aacccttcaggagattatgagagcatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatggtcagtttcagattgcactg 5668694  T
Q  128 ctgaaggtttgaaggta 144  Q
    | |||||||| ||||||    
T  5668693 cagaaggtttaaaggta 5668677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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