View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_14 (Length: 390)
Name: NF7369_low_14
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 8679542 - 8679312
Alignment:
| Q |
9 |
agcagagattgaagaaggaggaaaccacaagtataaagatgtagggttagtcttagatacggtgatgatggcccacactaactatggcaaagaacgtacc |
108 |
Q |
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| T |
8679542 |
agcagtgattgaagaaggaggaaaccacaagtataaagatgtagggttagtgttagacatggtgatgatggcacacactaactatggcaaagaacgtacc |
8679443 |
T |
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| Q |
109 |
ctgaaagagtgggaatatctgatcaaaatggctggatttaagggatgcaatgtgaaatctatcaatgctgtacaatgtgtaattttggctttttgctaaa |
208 |
Q |
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| T |
8679442 |
ctgaaagagtgggaatatgtgatcaaaatggctggatttaagggatgcactgtgaaatctatcaatgctgtacaatgtgtaattttggctttttgctaaa |
8679343 |
T |
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| Q |
209 |
attatcacaaggcaaattatacttttattgt |
239 |
Q |
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| T |
8679342 |
attatcacaaggcaaactatacttttattgt |
8679312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 8677901 - 8677762
Alignment:
| Q |
233 |
ttattgtgttaattaagcatgcattatgcattatagtaccatgatgtagaatataataaataatcattagatccattggaaagattgtccaccttgatga |
332 |
Q |
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| T |
8677901 |
ttattgtgttaattaagcatgcattatgcattatagtaccatgatgtagaatataatagataatcattagatccatattaaagattgtccaccttgatga |
8677802 |
T |
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| Q |
333 |
gatacgaggaaattatttatactgatttggagtaaattcc |
372 |
Q |
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| T |
8677801 |
gatacgaggaaactatttatactgatttggagtaaattcc |
8677762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 8696816 - 8696918
Alignment:
| Q |
272 |
catgatgtagaatata--ataaataatcattagatccattggaaagattgtccaccttgatgagatacgaggaaattatttatactgatttggagtaaat |
369 |
Q |
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| T |
8696816 |
catgatgtagaatatataatagatattcattagatccataagaaagattgcccaccttgatgggataccaagaaattattaatactgatttggagtaaat |
8696915 |
T |
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| Q |
370 |
tcc |
372 |
Q |
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||| |
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| T |
8696916 |
tcc |
8696918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 37740311 - 37740167
Alignment:
| Q |
35 |
acaagtataaagatgtagggttagtcttagatacggtgatgatggcccacactaactatggcaaagaacgtaccctgaaagagtgggaatatctgatcaa |
134 |
Q |
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| T |
37740311 |
acaagtataaagacgtagggttaatgttagacatggtgatgatggcacacacaaacattggcaaagaaaggacactcaaagaatgggaatatgtgatcaa |
37740212 |
T |
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| Q |
135 |
aatggctggatttaagggatgcaatgtgaaatctatcaatgctgt |
179 |
Q |
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| T |
37740211 |
aatggctggattcaaagcactcattgtgaaatctatcaatgctgt |
37740167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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