View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7369_low_15 (Length: 373)
Name: NF7369_low_15
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 1379421 - 1379774
Alignment:
| Q |
19 |
aaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctccctttagaatacaataaattcacccataatttcaaagaagcactttccat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1379421 |
aaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctcccttcagaatacaataaattcacccataatttcaaagaagcactttccat |
1379520 |
T |
|
| Q |
119 |
attagtttcaaaatgtggggtttgnnnnnnnncacaaattagttgtttcttttcccgtgtagcaaaatgacattgttgctttaatttgtttcattcttga |
218 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1379521 |
atgagtttcaaaatgtggggtttg-tttttttcacaaattagttgtttcttttccggtgtagcaaaatgacattgttgc-----tttgtttcattcttga |
1379614 |
T |
|
| Q |
219 |
gaaatgtaatggtttgtatttcatgttggctgcttatttgattggcta------------------ttgatttgaagaggagcatcgacgtctcatacat |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
1379615 |
gaaatgtaatggtttgta-ttcatgttggctgcttatttgattggctattgatttgatttgcaggtttgatttgaagaggagcatcgacgtctcataaat |
1379713 |
T |
|
| Q |
301 |
ataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1379714 |
ataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccat |
1379774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 6605145 - 6605344
Alignment:
| Q |
176 |
tgtagcaaaatgacattgttgctttaatttgtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttg- |
274 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6605145 |
tgtagcaaaatgacattgttgcttt-----gtttcattcttgagaaatgtaatggttcctatttcatattggctacttatttgattggctattgatttgg |
6605239 |
T |
|
| Q |
275 |
-----------------aagaggagcatcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgt--tatgtttgat |
355 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||||||| || | ||| |||||||||||||||| |||||||||| |
|
|
| T |
6605240 |
tatgcgagtttgattggaagaggatgattaacatctcatacatataatgaagcttcaaaatgacccgtttttgaacctatatgtatgttatatgtttgat |
6605339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 3082093 - 3082167
Alignment:
| Q |
284 |
atcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtc |
358 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3082093 |
atcgacatctcatacatataatgaagcttcaaaatgaccagctttttaacctatatgtatgttatgtttgatgtc |
3082167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 3081997 - 3082066
Alignment:
| Q |
206 |
gtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttga |
275 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
3081997 |
gtttcattcttgagaaatgtgatggttacaatttcatattggctacttatttgattggttattgatttga |
3082066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University