View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_17 (Length: 333)
Name: NF7369_low_17
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 2775987 - 2775664
Alignment:
| Q |
1 |
tcaaaattatggcatgcgattgagttcacacctctactctaccaaattaggtctgtcgtttctcttacagttttttgtctgcataataattatagaatag |
100 |
Q |
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| T |
2775987 |
tcaaaattatggcatgcgattgagttcacacctctactctaccaaattaggtctgtcgtttctcttacagttttttgtctgcataataattatagaatag |
2775888 |
T |
|
| Q |
101 |
ttagcaaacaaaatgattgttttctagtttctgcaccaaatcattcacaacatttacaatgaggatgatgtttcttttttggttctgtcatgttgtacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2775887 |
ttagcaaacaaaatgattgttttctagtttctgcaccaaatcattcacaacatttacaatgaggatgatgtttcttttttggttctgtcatgttgtacaa |
2775788 |
T |
|
| Q |
201 |
tcattgagctaccaagaatatgataatggagtgggtttggaagcaaggtttgaagaaaacaaaaatttcctagacatttcagttagtttagctgtagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2775787 |
tcattgagctaccaagaatatgataatggagtgggtttggaagcaaggtttgaagaaaacaaaaatttcctagacatttcagttagtttagctgtagaaa |
2775688 |
T |
|
| Q |
301 |
atgagaggaaagtgcacaggttct |
324 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
2775687 |
atgagaggaaagcgcacaggttct |
2775664 |
T |
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