View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_18 (Length: 333)
Name: NF7369_low_18
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 29209070 - 29208754
Alignment:
| Q |
17 |
cagagacaacaaacattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttc |
116 |
Q |
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| T |
29209070 |
cagagacaacaaacattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttc |
29208971 |
T |
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| Q |
117 |
tccaaagaatcaaatacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacata |
216 |
Q |
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| T |
29208970 |
tccaaagaatcaaatacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacata |
29208871 |
T |
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| Q |
217 |
ataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacag |
316 |
Q |
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| T |
29208870 |
ataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacag |
29208771 |
T |
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| Q |
317 |
aaattaaattaaatttt |
333 |
Q |
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| T |
29208770 |
aaattaaattaaatttt |
29208754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 38377513 - 38377627
Alignment:
| Q |
207 |
aaggaacataataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgat |
306 |
Q |
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| T |
38377513 |
aaggaacataata-ggattgataaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgt---tgat |
38377608 |
T |
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| Q |
307 |
gtagcaacagaaattaaat |
325 |
Q |
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| T |
38377609 |
gtagcaacagaaattaaat |
38377627 |
T |
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