View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_20 (Length: 308)
Name: NF7369_low_20
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 27430358 - 27430654
Alignment:
| Q |
1 |
ggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaa |
100 |
Q |
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| T |
27430358 |
ggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaa |
27430457 |
T |
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| Q |
101 |
tagttcctgcaaagc--atataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatgtgttcaaatagtga |
198 |
Q |
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| T |
27430458 |
tagttcctgcaaagcatatataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatttgttcaaatagtga |
27430557 |
T |
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| Q |
199 |
agttagtgcttaattaaactcgtaaaannnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgtcca |
298 |
Q |
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| T |
27430558 |
agtttgtgcttaattaaactcgtaaaa------atatatataccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattgatgacca |
27430651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 27447612 - 27447717
Alignment:
| Q |
8 |
taggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcc |
107 |
Q |
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|||||||| ||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
27447612 |
taggttgtcctgtgaagaggtggatcctcttgaattctttggacttgttttattgctttgcaaccttgatcatttttgtgagtgcatctgtaatagttcc |
27447711 |
T |
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| Q |
108 |
tgcaaa |
113 |
Q |
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| T |
27447712 |
tgcaaa |
27447717 |
T |
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