View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7369_low_28 (Length: 240)
Name: NF7369_low_28
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7369_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7773904 - 7774059
Alignment:
| Q |
1 |
ctaaaagcttaa-ttctcacaattctcaaaacatgtttaacaaatattgtatcaaataggaaacataatgaacggttcaatacaaaatctaaaaaacact |
99 |
Q |
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| T |
7773904 |
ctaaaagcttaaattctcacaattctcaaaacaagtttaacaaatattgtatcaaataggaaacataatgaatagttcaatacaaaatctaaaaaacact |
7774003 |
T |
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| Q |
100 |
attaaaacatcatgacatatcatcaaatagttcaatattgtcttgtttattctcaa |
155 |
Q |
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| T |
7774004 |
attaaaacatcatgacatatcattaattggttcaatattgtcttgtttattctcaa |
7774059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 40384121 - 40384197
Alignment:
| Q |
11 |
aattctcacaattctcaaaacatgtttaacaaatattgtatcaaa-taggaaacataatgaacggttcaatacaaaa |
86 |
Q |
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| T |
40384121 |
aattctcacatttctcaaaacatatttaacaaagattgtatcaaagtaggaaacataaagaatggttgaatacaaaa |
40384197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 52411435 - 52411400
Alignment:
| Q |
187 |
gttccagtcagacttcttcattaagacatcacttca |
222 |
Q |
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| T |
52411435 |
gttccagtcagacttcttcattaagacatcacttca |
52411400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 52411468 - 52411433
Alignment:
| Q |
1 |
ctaaaagcttaattctcacaattctcaaaacatgtt |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52411468 |
ctaaaagcttaattctcacaattctcaaaacatgtt |
52411433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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