View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7369_low_33 (Length: 201)

Name: NF7369_low_33
Description: NF7369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7369_low_33
NF7369_low_33
[»] chr4 (4 HSPs)
chr4 (14-168)||(43460595-43460749)
chr4 (79-159)||(26336002-26336082)
chr4 (123-168)||(26341378-26341423)
chr4 (134-168)||(43461441-43461475)
[»] chr5 (6 HSPs)
chr5 (14-168)||(6051768-6051922)
chr5 (14-157)||(12697329-12697472)
chr5 (123-168)||(6052605-6052650)
chr5 (123-168)||(12698147-12698192)
chr5 (133-168)||(209531-209566)
chr5 (117-165)||(6437381-6437428)
[»] chr6 (2 HSPs)
chr6 (14-115)||(24064592-24064693)
chr6 (123-168)||(24063865-24063910)
[»] chr8 (2 HSPs)
chr8 (26-140)||(31286977-31287091)
chr8 (123-166)||(31286252-31286295)
[»] chr2 (1 HSPs)
chr2 (117-165)||(23244828-23244875)
[»] chr1 (2 HSPs)
chr1 (117-165)||(3929188-3929235)
chr1 (84-140)||(14235979-14236035)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 43460749 - 43460595
Alignment:
Q  14 gaaatgaatggtgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttagatctaatggct 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  43460749 gaaatgaatggcgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaactaaacactatctcaaccgatgacttaaatctaatggct 43460650  T
Q  114 attatttgatcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  43460649 attatttggtcctctcaccctctcattataacacttcctctcatttgatacatcc 43460595  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 26336082 - 26336002
Alignment:
Q  79 acactatctcaaccgatgacttagatctaatggctattatttgatcctcttaccctctcattataacacttcctctcattt 159  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26336082 acactatctcaaccgatgacttaaatctaatggctattatttggtcctctcaccctctcattataacacttcctctcattt 26336002  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 26341378 - 26341423
Alignment:
Q  123 tcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  26341378 tcctctcaccctctcattataacacttcctctcatttgatacatcc 26341423  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 43461441 - 43461475
Alignment:
Q  134 tctcattataacacttcctctcatttaatacatcc 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  43461441 tctcattataacacttcctctcatttgatacatcc 43461475  T

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Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 6051922 - 6051768
Alignment:
Q  14 gaaatgaatggtgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttagatctaatggct 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  6051922 gaaatgaatggcgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgttgacttaaatctaatggct 6051823  T
Q  114 attatttgatcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    || ||||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  6051822 atcatttggtcctctcaccctctcattataacacttcctctcatttgatacatcc 6051768  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 12697472 - 12697329
Alignment:
Q  14 gaaatgaatggtgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttagatctaatggct 113  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  12697472 gaaatgaatggcgcgtggagaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatcttaaccgttgacttaaatctaatggct 12697373  T
Q  114 attatttgatcctcttaccctctcattataacacttcctctcat 157  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  12697372 attatttggtcctctcaccctctcattataacacttcctctcat 12697329  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 6052605 - 6052650
Alignment:
Q  123 tcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||    
T  6052605 tcctctcactctctcattataacacttcctctcatttgatacatcc 6052650  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 12698147 - 12698192
Alignment:
Q  123 tcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||    
T  12698147 tcctctcagcctctcattataacacttcctctcatttgatacatcc 12698192  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 209566 - 209531
Alignment:
Q  133 ctctcattataacacttcctctcatttaatacatcc 168  Q
    ||||||||||||||||||||||||||| ||||||||    
T  209566 ctctcattataacacttcctctcatttgatacatcc 209531  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 6437381 - 6437428
Alignment:
Q  117 atttgatcctcttaccctctcattataacacttcctctcatttaataca 165  Q
    |||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  6437381 atttgatcatctcaccctctcattataacac-tcctctcatttgataca 6437428  T

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Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24064592 - 24064693
Alignment:
Q  14 gaaatgaatggtgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttagatctaatggct 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24064592 gaaatgaatggcgcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttaaatctaatggct 24064691  T
Q  114 at 115  Q
    ||    
T  24064692 at 24064693  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 24063910 - 24063865
Alignment:
Q  123 tcctcttaccctctcattataacacttcctctcatttaatacatcc 168  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  24063910 tcctctcaccctctcattataacacttcctctcatttgatacatcc 24063865  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 31286977 - 31287091
Alignment:
Q  26 gcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatattaattaaacactatctcaaccgatgacttagatctaatggctattatttgatcc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||  |||    
T  31286977 gcgtggggaaaccgtgaaactaaatgaaaaggaaacatgtgcatactaattaaacactatctcaaccgttgacttaaatctaatggctattatttagtcc 31287076  T
Q  126 tcttaccctctcatt 140  Q
    ||| |||||||||||    
T  31287077 tctcaccctctcatt 31287091  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 31286295 - 31286252
Alignment:
Q  123 tcctcttaccctctcattataacacttcctctcatttaatacat 166  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||    
T  31286295 tcctctcaccctctcattataacactttctctcatttgatacat 31286252  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 23244875 - 23244828
Alignment:
Q  117 atttgatcctcttaccctctcattataacacttcctctcatttaataca 165  Q
    |||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  23244875 atttgatcatctcaccctctcattataacac-tcctctcatttgataca 23244828  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 3929188 - 3929235
Alignment:
Q  117 atttgatcctcttaccctctcattataacacttcctctcatttaataca 165  Q
    |||||||||||| | |||||||||||||||| ||||||||||| |||||    
T  3929188 atttgatcctctcatcctctcattataacac-tcctctcatttgataca 3929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 14236035 - 14235979
Alignment:
Q  84 atctcaaccgatgacttagatctaatggctattatttgatcctcttaccctctcatt 140  Q
    |||||||||| ||| | ||||||||||||| ||||||  |||||| |||||||||||    
T  14236035 atctcaaccgttgaatcagatctaatggctgttatttactcctctcaccctctcatt 14235979  T

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