View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7370_high_4 (Length: 361)

Name: NF7370_high_4
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7370_high_4
NF7370_high_4
[»] chr5 (1 HSPs)
chr5 (13-346)||(9603066-9603394)
[»] chr8 (11 HSPs)
chr8 (18-124)||(6364468-6364574)
chr8 (30-218)||(6452071-6452259)
chr8 (20-115)||(6353604-6353699)
chr8 (20-115)||(6392100-6392195)
chr8 (30-216)||(6458166-6458352)
chr8 (20-114)||(7460677-7460771)
chr8 (20-115)||(6290512-6290607)
chr8 (13-126)||(6275749-6275862)
chr8 (48-115)||(6264935-6265002)
chr8 (30-115)||(6411264-6411349)
chr8 (13-129)||(6371294-6371410)
[»] chr2 (2 HSPs)
chr2 (30-115)||(42694396-42694481)
chr2 (144-194)||(42687290-42687340)
[»] chr3 (3 HSPs)
chr3 (86-126)||(35706521-35706561)
chr3 (92-126)||(35722349-35722383)
chr3 (90-126)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 9603066 - 9603394
Alignment:
Q  13 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603066 attagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 9603165  T
Q  113 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603166 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 9603265  T
Q  213 caactaaaaagggtaaannnnnnnnnnnnnnnnnntttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 312  Q
    |||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603266 caactaaaaagggtaaa-----aaaaaatattaattttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 9603360  T
Q  313 acagatcctaaaagtgagagaccaggtgtgatgt 346  Q
    ||||||||||||||||||||||||||||||||||    
T  9603361 acagatcctaaaagtgagagaccaggtgtgatgt 9603394  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6364574 - 6364468
Alignment:
Q  18 tctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatct 117  Q
    ||||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||||||||||||||||||| |    
T  6364574 tctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgattt 6364475  T
Q  118 tggtgat 124  Q
     ||||||    
T  6364474 gggtgat 6364468  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 6452259 - 6452071
Alignment:
Q  30 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 129  Q
    ||||||| ||||| ||||||||||||||||| || ||| |||| ||||||||||| ||  | || ||||||||||| || |||||||| ||  |||| ||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctga 6452160  T
Q  130 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta 218  Q
    ||  |  | |   |||| ||||||  |||||||||| |||||||| ||||| |||||||| |||||||||| |||| ||||||||||||    
T  6452159 tggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta 6452071  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 6353699 - 6353604
Alignment:
Q  20 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6353699 tactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6353604  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 6392195 - 6392100
Alignment:
Q  20 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||| ||| | ||||||||||||||||||||||||    
T  6392195 tactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat 6392100  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 6458352 - 6458166
Alignment:
Q  30 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 129  Q
    ||||||| ||||| | ||||||||||||||| |||||| | || ||||||  ||| |||||||||||||||||| | || |||||| | ||  |||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttgggaaatccaga 6458253  T
Q  130 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaac 216  Q
    ||  | || |   ||||  ||||| |||||||| || || |||||  |||| |||||||| ||||||||||||||| ||||||||||    
T  6458252 tggtggtgacgcacttgtccgtcctgtccttgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaac 6458166  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 7460771 - 7460677
Alignment:
Q  20 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatga 114  Q
    ||||||||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||| ||| | |||||||||||||||||||||||    
T  7460771 tactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatga 7460677  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 6290607 - 6290512
Alignment:
Q  20 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||| ||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6290607 tactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6290512  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 6275862 - 6275749
Alignment:
Q  13 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 112  Q
    |||| ||||||| ||||||||||| ||| | | | ||||||||||||| || ||| | || ||||||||||||||  | ||||| || ||||||||||||    
T  6275862 attagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaat 6275763  T
Q  113 gatcttggtgatcc 126  Q
    ||| | ||||||||    
T  6275762 gatgtgggtgatcc 6275749  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 6265002 - 6264935
Alignment:
Q  48 taagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||||||||||| || ||  | || ||||||||||| |||||||||||||||||||| |||||||||    
T  6265002 taagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgat 6264935  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 6411349 - 6411264
Alignment:
Q  30 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||||||||| | | | ||||||||||||| |||||| | || || | |||||| ||| | ||||||||||||||||||||||||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgat 6411264  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 6371410 - 6371294
Alignment:
Q  13 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 112  Q
    |||| ||||||||||||||||||| ||| | | | ||||||||||||| || ||  | || ||||||||||| ||  | ||||| || ||||||||||||    
T  6371410 attagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaat 6371311  T
Q  113 gatcttggtgatccaga 129  Q
    ||| | ||||| |||||    
T  6371310 gatttgggtgaaccaga 6371294  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 42694481 - 42694396
Alignment:
Q  30 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 115  Q
    ||||||||||| | ||| ||||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||||||||||||||    
T  42694481 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgat 42694396  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 42687290 - 42687340
Alignment:
Q  144 ttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg 194  Q
    ||||||| || || ||||||||||||||||| |||||||||||||| ||||    
T  42687290 ttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg 42687340  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 35706521 - 35706561
Alignment:
Q  86 agagtttatgattatgatgtctacaatgatcttggtgatcc 126  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  35706521 agagtttatgactatgatgtctacaatgatcttggagatcc 35706561  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 35722349 - 35722383
Alignment:
Q  92 tatgattatgatgtctacaatgatcttggtgatcc 126  Q
    ||||||||||||||||||||||||||||| |||||    
T  35722349 tatgattatgatgtctacaatgatcttggagatcc 35722383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 35728313 - 35728277
Alignment:
Q  90 tttatgattatgatgtctacaatgatcttggtgatcc 126  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  35728313 tttatgactatgatgtctacaatgatcttggagatcc 35728277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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