View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7370_low_1 (Length: 851)
Name: NF7370_low_1
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7370_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 728; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 13 - 793
Target Start/End: Complemental strand, 46825167 - 46824387
Alignment:
| Q |
13 |
tagattatactgaaaaggtattttataacatcaaggatccatgtttggcaacatggaatgccatcatatcaggttatagtttatatggtcttgagcatac |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46825167 |
tagattatgctgaaaaggtattttataacatcaaggatccatgtttggcaacatggaatgccatcatatcaggttatagtttatatggtcttgagcatac |
46825068 |
T |
|
| Q |
113 |
agctttcggttgttattctaaactgcaagaacaagggttaaaaccggataaaatcaccttcttgggagttttggcagcatgcacgcacggggaacttgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
46825067 |
agctttcggttgttattctaaactgcaagaacaagggttaaaaccggataaaatcaccttcttgggagttttggcagcatgcacgcatgggggacttgtc |
46824968 |
T |
|
| Q |
213 |
tatttaggactggaatacttcaatatcatgactaaagagtatggtttgatgccgagtctgcaacattatgcatgcatagttgctctattaggtaaagaag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46824967 |
tatttaggactggaatacttcaatatcatgactaaagagtatggtttgatgcccagtctgcaacattatgcatgcatagttgctctattaggtaaagaag |
46824868 |
T |
|
| Q |
313 |
gcttgttcaaggaagcaattgaatttataaacaaaatggagattcagcccgattctgctgtctggggagctttgctaaatgcttgttgcatccaacgaga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46824867 |
gcttgttcaaggaagcaattgaatttataaacaaaatggagattcagcccgattctgctgtctggggagctttgttaaatgcttgttgcatccaacgaga |
46824768 |
T |
|
| Q |
413 |
ggtgaagcttggggaatgcttggcnnnnnnnttgtttctattaaatcacaaaaatggtggattttatgtattaatgtcaaatctttatgccattgttggg |
512 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46824767 |
ggtgaagcttggggaatgcttggcaaaaaaattgtttctattaaatcacaaaaatggtggattttatgtattaatgtcaaatctttatgccattgttggg |
46824668 |
T |
|
| Q |
513 |
agatgggatgatgtagcaagggtgagggaaatgatgaaagatagtggaggagatggatgttcaggtgttagtgttattgatgtgatttctgctgatgact |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46824667 |
agatgggatgatgtagcaagggtgagggaaatgatgaaagatagtggaggagatggatgttcaggtgttagtgttattgatgtgatttctgctgatgact |
46824568 |
T |
|
| Q |
613 |
ctaataacaacaacaacttagccccaagtgaagtctatttgaatacaaacatttggcagcatttgtgtctatattgacttcataatgcataaccaccggg |
712 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46824567 |
ctaataacaacaacaacttaggcccaagtgaagtctatttgaatacaagcatttggcagcatttgtgtctatattgacttcataatgcataaccaccggg |
46824468 |
T |
|
| Q |
713 |
atatatttgatgtgtctattcatcatcagaatagaagatttggatgcaaataagccttgcctagaacgaattttaagagtt |
793 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46824467 |
atatatttgatgtgtctattcatcatcagaatagaagatttggatgcaaataatccttgcctagaacgaattttaagagtt |
46824387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 791 - 837
Target Start/End: Complemental strand, 46821105 - 46821059
Alignment:
| Q |
791 |
gttggcaaatggtgtttgggttgaactgtacaaataaaaatatgatg |
837 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
46821105 |
gttggctaatggtgtctgggttgaactgtacaaataaaaataagatg |
46821059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University