View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7370_low_12 (Length: 294)

Name: NF7370_low_12
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7370_low_12
NF7370_low_12
[»] chr1 (5 HSPs)
chr1 (18-294)||(6349648-6349923)
chr1 (166-219)||(25915326-25915379)
chr1 (165-219)||(4182413-4182467)
chr1 (52-94)||(43246337-43246379)
chr1 (232-289)||(6381991-6382048)
[»] chr2 (3 HSPs)
chr2 (142-219)||(16419917-16419994)
chr2 (142-219)||(16246637-16246714)
chr2 (142-219)||(26164263-26164340)
[»] chr3 (1 HSPs)
chr3 (143-219)||(20642838-20642914)
[»] chr5 (2 HSPs)
chr5 (143-219)||(21523418-21523494)
chr5 (143-219)||(21533984-21534060)
[»] chr7 (1 HSPs)
chr7 (142-219)||(42496855-42496932)
[»] chr4 (2 HSPs)
chr4 (182-217)||(25717569-25717604)
chr4 (142-218)||(28344666-28344742)
[»] chr6 (2 HSPs)
chr6 (142-216)||(19040965-19041039)
chr6 (124-216)||(18803984-18804076)
[»] chr8 (1 HSPs)
chr8 (166-218)||(2664419-2664471)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 6349923 - 6349648
Alignment:
Q  18 ccattaagggaaaggccaaaatgaagagaagtagtattatcgatggcagatggcagaccatgacggaaagccaaaaatccccataaggcgccgccatatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  6349923 ccattaagggaaaggccaaaatgaagagaagtagtattatcgatggcagatggcagaccatgacggaaagccaaaaatccccata-ggcaccgccatatc 6349825  T
Q  118 caccacaaaacaccatggttatgtcatccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6349824 caccacaaaacaccatggttatgtcatccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggccgatatttgacaaca 6349725  T
Q  218 ctcgagataaaagtgcttagttggcaagctagctagagatagggagagaaatacacatgggagagaggaatacatat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6349724 ctcgagataaaagtgcttagttggcaagctagctagagatagggagagaaatacacatgggagagaggaatatatat 6349648  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 25915326 - 25915379
Alignment:
Q  166 ggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    |||||| |||||||||||||| |||||| |||||||| ||||||||||||||||    
T  25915326 ggttgtcaaaaaatccaccactgcaatctgccatggccgatatttgacaacact 25915379  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 4182467 - 4182413
Alignment:
Q  165 cggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||| ||||||||||| ||| ||||||||||||||  |||||||||||||||    
T  4182467 cggttgtcaaaaaatccactaccacaatccgccatggccaatatttgacaacact 4182413  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 43246337 - 43246379
Alignment:
Q  52 tattatcgatggcagatggcagaccatgacggaaagccaaaaa 94  Q
    |||||||||| ||||||||| |||||| |||||||||||||||    
T  43246337 tattatcgatagcagatggcggaccattacggaaagccaaaaa 43246379  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 6381991 - 6382048
Alignment:
Q  232 gcttagttggcaagctagctagagatagggagagaaatacacatgggagagaggaata 289  Q
    ||||||||| |||  ||| |||||| |||||||||||||||||||| |||| ||||||    
T  6381991 gcttagttgtcaacttagttagagagagggagagaaatacacatggaagaggggaata 6382048  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 16419917 - 16419994
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||||||||||||||| || | ||| |  |||||||||||||||  |||||||||| ||||||||||||||||||    
T  16419917 catccttcacaaataggtcgtggcagttttccaaaaatccaccaccgatatccgccatgactgatatttgacaacact 16419994  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 16246714 - 16246637
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||||||||||||||| || | ||| |  |||||||| || |||  ||||| ||||||| |||||||||||||||    
T  16246714 catccttcacaaataggtcgtggcagttttccaaaaatccgccgccgatatccgtcatggctaatatttgacaacact 16246637  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 26164263 - 26164340
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    |||||||||||||| || |||  ||||| || |||||| ||||||||  |||| ||||||| ||||||||| ||||||    
T  26164263 catccttcacaaattggccatatcggtttttcaaaaattcaccaccgatatccaccatggccgatatttgaaaacact 26164340  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 20642838 - 20642914
Alignment:
Q  143 atccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||| ||||| || ||||  |||||| ||||||||| |||||||||||| || |||||||||||||||||||||    
T  20642838 atccttcccaaattggccatgaaggttgtcaaaaaatccgccaccgcaatccaccgtggctgatatttgacaacact 20642914  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 21523494 - 21523418
Alignment:
Q  143 atccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||| ||||| || ||||  |||||| ||||||||| || ||||||||| || |||||||||||||||||||||    
T  21523494 atccttcccaaattggccatgaaggttgtcaaaaaatccgcctccgcaatccaccgtggctgatatttgacaacact 21523418  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 21534060 - 21533984
Alignment:
Q  143 atccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||| ||||| || ||||  |||||| ||||||||| || ||||||||| || |||||||||||||||||||||    
T  21534060 atccttcccaaattggccatgaaggttgtcaaaaaatccgccgccgcaatccaccgtggctgatatttgacaacact 21533984  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 42496855 - 42496932
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacact 219  Q
    ||||||||||||||||||| || | ||| |  |||||||| ||||||  |||||||||| || |||||||||||||||    
T  42496855 catccttcacaaataggtcgtggcagttttccaaaaatccgccaccgacatccgccatgactaatatttgacaacact 42496932  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 25717604 - 25717569
Alignment:
Q  182 accaccgcaatccgccatggctgatatttgacaaca 217  Q
    |||||||||||||||||| |||||||||||||||||    
T  25717604 accaccgcaatccgccatagctgatatttgacaaca 25717569  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 28344666 - 28344742
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacac 218  Q
    |||||||||||||| || | || ||||||| ||||||||| |||||  |||||| ||| ||  ||||||||||||||    
T  28344666 catccttcacaaattggccgtggcggttgtaaaaaaatccgccaccataatccgacatcgcccatatttgacaacac 28344742  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 19041039 - 19040965
Alignment:
Q  142 catccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaac 216  Q
    ||||||||||||||   ||||||||||||| |||| |||| |||||  |||||  |||||| |||||||||||||    
T  19041039 catccttcacaaatttctcatgccggttgtcaaaatatccgccaccataatcctgcatggccgatatttgacaac 19040965  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 18804076 - 18803984
Alignment:
Q  124 aaaacaccatggttatgtcatccttcacaaataggtcatgccggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaac 216  Q
    |||||||||||||   | ||||||||||||||   |||||| |||||| |||| ||||| |||||| ||||   ||||| |||||||||||||    
T  18804076 aaaacaccatggtgccggcatccttcacaaatttctcatgctggttgtcaaaatatccaacaccgcgatccagtatggccgatatttgacaac 18803984  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 2664471 - 2664419
Alignment:
Q  166 ggttgttaaaaaatccaccaccgcaatccgccatggctgatatttgacaacac 218  Q
    |||||| |||| ||||||||| ||||||||||||||  |||||||||| ||||    
T  2664471 ggttgtcaaaacatccaccactgcaatccgccatggaagatatttgactacac 2664419  T

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