View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7370_low_2 (Length: 748)

Name: NF7370_low_2
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7370_low_2
NF7370_low_2
[»] scaffold0054 (1 HSPs)
scaffold0054 (97-435)||(43896-44234)
[»] chr4 (1 HSPs)
chr4 (391-510)||(3499072-3499189)
[»] chr7 (2 HSPs)
chr7 (337-495)||(45627599-45627756)
chr7 (337-497)||(30783777-30783936)
[»] chr2 (7 HSPs)
chr2 (374-509)||(30054041-30054176)
chr2 (374-509)||(30145084-30145219)
chr2 (368-469)||(17708894-17708988)
chr2 (529-612)||(39140569-39140652)
chr2 (316-357)||(17708948-17708989)
chr2 (320-357)||(30054038-30054075)
chr2 (320-357)||(30145081-30145118)
[»] chr5 (1 HSPs)
chr5 (369-460)||(31183541-31183630)
[»] chr6 (1 HSPs)
chr6 (316-478)||(12155603-12155756)
[»] scaffold0209 (1 HSPs)
scaffold0209 (380-435)||(15215-15270)
[»] scaffold0028 (1 HSPs)
scaffold0028 (380-435)||(20741-20796)
[»] chr1 (1 HSPs)
chr1 (316-367)||(9322861-9322912)
[»] scaffold0264 (2 HSPs)
scaffold0264 (316-357)||(24087-24128)
scaffold0264 (417-469)||(24033-24085)
[»] chr8 (1 HSPs)
chr8 (412-470)||(39326371-39326429)


Alignment Details
Target: scaffold0054 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 97 - 435
Target Start/End: Complemental strand, 44234 - 43896
Alignment:
Q  97 tatagcctagaaatgaagaggtcggaggtctgagattaaatggaaaaaggaatgggtcgagaaatgagattgaggaacaatgaagaaaaggaaccgagca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44234 tatagcctagaaatgaagaggtcggaggtctgagattaaatggaaaaaggaatggatcgagaaatgagattgaggaacaatgaagaaaaggaaccgagca 44135  T
Q  197 gtggttgaaaaggaaccgagaaatgagcttgagagtgagggacgaaatgctaccattgagccagaggttagtgtgatggtgagattaagccaggggtttg 296  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44134 gtggttgaaaaggaaccgagaaatgagattgagagtgaggaacgaaatgctaccattgagccagaggttagtgtgatggtgagattgagccaggggtttg 44035  T
Q  297 cgattgagattgtgccagcggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44034 cgattgagattgtgccagcggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagg 43935  T
Q  397 gaaagtgagattgaggaataaaattgggttttagggttt 435  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43934 gaaagtgagattgaggaataaaattgggttttagggttt 43896  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 391 - 510
Target Start/End: Original strand, 3499072 - 3499189
Alignment:
Q  391 ttgagggaaagtgagattgaggaataaaattgggttttagggttttggttctgtgggagggagactgaaattggaaaagctggggtgacaaaatatttgg 490  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||   |||||||  |||||| |||||||||||||| |  ||||  |||||||||    
T  3499072 ttgagggaaagtgagattgaggaataaaatggggttttagggttttggagttgtgggaacgagactcaaattggaaaagcttgattgac--aatatttgg 3499169  T
Q  491 ccaaaagctttaatgtgaag 510  Q
    ||||||||||||||||||||    
T  3499170 ccaaaagctttaatgtgaag 3499189  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 45627756 - 45627599
Alignment:
Q  337 aatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggtttt 436  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||| |||||||| |||||| ||| ||||| |||||||||||| ||||||||||||    
T  45627756 aatttgggggaaagtg-gattgtgggtgagagtggtggaaatttaggtgtcagattgggggaaaatgaaattgatgaataaaattggattttagggtttt 45627658  T
Q  437 ggttctgtgggagggagactgaaattggaaaagctggggtgacaaaatatttggccaaa 495  Q
    |   || ||||||||||| |||||||| | |||| || ||  |||||||||||||||||    
T  45627657 gaaactatgggagggagaatgaaattgcagaagcgggagtatcaaaatatttggccaaa 45627599  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 337 - 497
Target Start/End: Complemental strand, 30783936 - 30783777
Alignment:
Q  337 aatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggtttt 436  Q
    |||||||||| ||||| |||| |||||||| | |||||| |||||||| | |||||| | |||||||| ||||| |||||||||||| ||||||||||||    
T  30783936 aatttgggggaaagtg-gattgtgggtgagagaggtggaaatttaggtgtgagattgggcgaaagtgaaattgatgaataaaattggattttagggtttt 30783838  T
Q  437 ggttctgtgggagggagactgaaattggaaaagctggggtgacaaaatatttggccaaaag 497  Q
    |   || ||||||||||| |||||||| | |||| || ||  ||||||||||| |||||||    
T  30783837 gaaactatgggagggagaatgaaattgcagaagcgggagtaccaaaatatttgaccaaaag 30783777  T

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Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 30054041 - 30054176
Alignment:
Q  374 gagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttttggttctgtgggagggagactgaaattggaaaagctgg 473  Q
    ||||||||||||| |  ||| |||||||| |||||| |||||||||||||||||||||||||| |  |  |||||||||||||||||| || ||||| ||    
T  30054041 gagatttaggttttaatttgggggaaagttagattgtggaataaaattgggttttagggtttttgagcaatgggagggagactgaaatcgggaaagcggg 30054140  T
Q  474 ggtgacaaaatatttggccaaaagctttaatgtgaa 509  Q
     |||| | |||||||||||||||  |||| ||||||    
T  30054141 agtgatagaatatttggccaaaatatttattgtgaa 30054176  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 30145084 - 30145219
Alignment:
Q  374 gagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttttggttctgtgggagggagactgaaattggaaaagctgg 473  Q
    ||||||||||||| |  ||| |||||||| |||||| |||||||||||||||||||||||||| |  |  |||||||||||||||||| || ||||| ||    
T  30145084 gagatttaggttttaatttgggggaaagttagattgtggaataaaattgggttttagggtttttgagcaatgggagggagactgaaatcgggaaagcggg 30145183  T
Q  474 ggtgacaaaatatttggccaaaagctttaatgtgaa 509  Q
     |||| | |||||||||||||||  |||| ||||||    
T  30145184 agtgatagaatatttggccaaaatatttattgtgaa 30145219  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 17708988 - 17708894
Alignment:
Q  368 gtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttttggttctgtgggagggagactgaaattggaaa 467  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||       |||||| | ||||||||||||  || ||||||||||||||||||||||||    
T  17708988 gtggtagagatttaggtttcaaattgggggaaagtgagattga-------aattggctattagggttttggagctatgggagggagactgaaattggaaa 17708896  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 612
Target Start/End: Original strand, 39140569 - 39140652
Alignment:
Q  529 gtaaaacctatgatccttaagcctaacagttgcattaacggtcagaaaagtgtaatctgcggtagttctaagccaagggttgca 612  Q
    |||||||||  || ||||||||||||||||||||  ||| |||   |||||||||||||||  ||||||||| |||||||||||    
T  39140569 gtaaaacctgcgacccttaagcctaacagttgcaacaacagtcgttaaagtgtaatctgcgacagttctaagtcaagggttgca 39140652  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 17708989 - 17708948
Alignment:
Q  316 ggtggtagagatttaggttttaatttggggggaagtgagatt 357  Q
    |||||||||||||||||||| || ||||||| ||||||||||    
T  17708989 ggtggtagagatttaggtttcaaattgggggaaagtgagatt 17708948  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 30054038 - 30054075
Alignment:
Q  320 gtagagatttaggttttaatttggggggaagtgagatt 357  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30054038 gtagagatttaggttttaatttgggggaaagttagatt 30054075  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 30145081 - 30145118
Alignment:
Q  320 gtagagatttaggttttaatttggggggaagtgagatt 357  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30145081 gtagagatttaggttttaatttgggggaaagttagatt 30145118  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 31183630 - 31183541
Alignment:
Q  369 tggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttttggttctgtgggagggagactgaaa 460  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    |||| ||||||||||||||    
T  31183630 tggtagagatttaggtttcagattg-gggaaagtgagattgag-aataaaattgggttttagggttttgaagttgtgagagggagactgaaa 31183541  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 478
Target Start/End: Original strand, 12155603 - 12155756
Alignment:
Q  316 ggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaat 415  Q
    |||| |||||||| |||||| ||| |||||| |||||||||| ||||| || |||||||||||||   |||||  ||| || |||||||         ||    
T  12155603 ggtgatagagattaaggtttcaatctgggggaaagtgagattgtgggtaagagtggtggagattttcatttcaatttggggaaaagtga---------at 12155693  T
Q  416 aaaattgggttttagggttttggttctgtgggagggagactgaaattggaaaagctggggtga 478  Q
    |||||| |||||||||||||||   ||||||||| |||| ||||| |||||||||||||||||    
T  12155694 aaaatttggttttagggttttgaagctgtgggagagagaatgaaaatggaaaagctggggtga 12155756  T

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Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 15270 - 15215
Alignment:
Q  380 taggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 435  Q
    |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  15270 taggtttcagattgagagaaagtgagattgaagaaaaaaattaggttttagggttt 15215  T

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Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 20741 - 20796
Alignment:
Q  380 taggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 435  Q
    |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  20741 taggtttcagattgagagaaagtgagattgaagaaaaaaattaggttttagggttt 20796  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 9322912 - 9322861
Alignment:
Q  316 ggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagt 367  Q
    ||||||||||||| |||||| |||||||||| |||||||||| |||||||||    
T  9322912 ggtggtagagattaaggtttcaatttgggggaaagtgagattgtgggtgagt 9322861  T

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Target: scaffold0264 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 24128 - 24087
Alignment:
Q  316 ggtggtagagatttaggttttaatttggggggaagtgagatt 357  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  24128 ggtggtagagatttaggtttcaatttgggaggaagtgagatt 24087  T

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Target: scaffold0264; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 24085 - 24033
Alignment:
Q  417 aaattgggttttagggttttggttctgtgggagggagactgaaattggaaaag 469  Q
    ||||||| | ||||||||||||  || ||||||||||||||||||||||||||    
T  24085 aaattggctattagggttttggagctatgggagggagactgaaattggaaaag 24033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 39326371 - 39326429
Alignment:
Q  412 gaataaaattgggttttagggttttggttctgtgggagggagactgaaattggaaaagc 470  Q
    |||||| ||| ||||||||||||||||   ||||||||||||| ||||| |||||||||    
T  39326371 gaataatatttggttttagggttttggagttgtgggagggagaatgaaaatggaaaagc 39326429  T

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