View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7370_low_3 (Length: 591)
Name: NF7370_low_3
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7370_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 32 - 582
Target Start/End: Original strand, 1482586 - 1483143
Alignment:
| Q |
32 |
accctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
131 |
Q |
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| T |
1482586 |
accctaatgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
1482685 |
T |
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| Q |
132 |
tgggctgagcttaatcatcttctgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
231 |
Q |
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| T |
1482686 |
tgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
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| Q |
232 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
331 |
Q |
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| T |
1482786 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
1482885 |
T |
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| Q |
332 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattaattgat |
431 |
Q |
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| T |
1482886 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgat |
1482985 |
T |
|
| Q |
432 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaa |
531 |
Q |
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| T |
1482986 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaa |
1483085 |
T |
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| Q |
532 |
ttagtgtgtaggatttaa-------gggtttctgggagttgctaggcatgatgtccat |
582 |
Q |
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| T |
1483086 |
ttagtgtgtaggatttaaggattaggggtttctgggagttgctaggcatgatgtccat |
1483143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 36717295 - 36717859
Alignment:
| Q |
13 |
acatcagaaaagggtttcgaccctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcataga |
112 |
Q |
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| T |
36717295 |
acatcagaaaagggttaggaccttgatgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-attaaagagaattgaaggagaaatcttaga |
36717393 |
T |
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| Q |
113 |
gcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatctgc |
206 |
Q |
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| T |
36717394 |
gcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgt |
36717493 |
T |
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| Q |
207 |
ttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgt |
306 |
Q |
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| T |
36717494 |
gtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgt |
36717593 |
T |
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| Q |
307 |
atatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatat |
406 |
Q |
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| T |
36717594 |
atatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataa |
36717693 |
T |
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| Q |
407 |
aatatattcttctatattaattgataatttttatt-------------------tgagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcag |
485 |
Q |
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| T |
36717694 |
gatatatggttctctattacttgattgttttttttttttttttttttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgg |
36717793 |
T |
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| Q |
486 |
ctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggatttaagg |
551 |
Q |
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| T |
36717794 |
gtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaaaccaatgtgtaggatttaagg |
36717859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
218 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
280 |
Q |
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| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
274 |
tgattttgttgcaattttggtataatccattgtatatattac-aatgtatgactataattttgaattgaat |
343 |
Q |
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| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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