View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7370_low_7 (Length: 377)

Name: NF7370_low_7
Description: NF7370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7370_low_7
NF7370_low_7
[»] chr4 (9 HSPs)
chr4 (80-341)||(8254318-8254579)
chr4 (80-341)||(8267736-8267997)
chr4 (136-340)||(38929053-38929257)
chr4 (170-261)||(31051204-31051295)
chr4 (318-359)||(4304955-4304996)
chr4 (143-251)||(46699456-46699563)
chr4 (81-128)||(28966403-28966450)
chr4 (200-249)||(30963892-30963941)
chr4 (318-350)||(7702824-7702856)
[»] chr1 (7 HSPs)
chr1 (136-338)||(19597878-19598080)
chr1 (136-275)||(46693414-46693552)
chr1 (194-339)||(24450444-24450588)
chr1 (200-251)||(41919909-41919960)
chr1 (203-251)||(31586287-31586335)
chr1 (214-250)||(24685106-24685142)
chr1 (84-128)||(50589807-50589851)
[»] chr5 (4 HSPs)
chr5 (136-340)||(27712338-27712542)
chr5 (136-340)||(22687153-22687357)
chr5 (149-361)||(697623-697834)
chr5 (83-128)||(27712614-27712659)
[»] chr6 (2 HSPs)
chr6 (81-222)||(13099089-13099232)
chr6 (200-261)||(12793554-12793615)
[»] chr7 (6 HSPs)
chr7 (203-361)||(37792648-37792806)
chr7 (149-326)||(10243484-10243660)
chr7 (293-341)||(38165702-38165750)
chr7 (194-261)||(38484992-38485059)
chr7 (198-275)||(1320127-1320204)
chr7 (200-273)||(3420242-3420315)
[»] chr2 (2 HSPs)
chr2 (152-340)||(2062180-2062368)
chr2 (200-273)||(31902967-31903040)
[»] chr3 (4 HSPs)
chr3 (150-340)||(45163272-45163461)
chr3 (200-272)||(1653499-1653571)
chr3 (150-249)||(2394726-2394825)
chr3 (200-273)||(17501816-17501889)
[»] chr8 (4 HSPs)
chr8 (150-340)||(37987465-37987654)
chr8 (200-251)||(34866640-34866691)
chr8 (203-251)||(9519068-9519116)
chr8 (200-251)||(10551755-10551806)
[»] scaffold0499 (1 HSPs)
scaffold0499 (81-213)||(5971-6105)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 8254579 - 8254318
Alignment:
Q  80 aggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggaag 179  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8254579 aggttcagcaggaacaagagcaagacaatgaggttgatagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggcag 8254480  T
Q  180 caacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgca 279  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||||| ||    
T  8254479 caacctgaacacagaccaaaaggaagatgaaacccaacaacaagacacgggcatcgacgtcggtctgaagtggagacacaacctagatcgtaaacataca 8254380  T
Q  280 ttcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagct 341  Q
    | ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  8254379 tccgtcagtgacgaggagaaggcgtctggcgctggagtaaacaacaatcaagccaaaaagct 8254318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 8267997 - 8267736
Alignment:
Q  80 aggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggaag 179  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8267997 aggttcagcaggaacaagagcaagacaatgaggttgatagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggcag 8267898  T
Q  180 caacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgca 279  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||||| ||    
T  8267897 caacctgaacacagaccaaaaggaagatgaaacccaacaacaagacacgggcatcgacgtcggtctgaagtggagacacaacctagatcgtaaacataca 8267798  T
Q  280 ttcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagct 341  Q
    | ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  8267797 tccgtcagtgacgaggagaaggcgtctggcgctggagtaaacaacaatcaagccaaaaagct 8267736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 340
Target Start/End: Complemental strand, 38929257 - 38929053
Alignment:
Q  136 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 235  Q
    ||||||||||||||   |||| | ||||| ||||||||||| | |||||  ||   ||| |||||||||||||| | | |||||||| |||||||||  |    
T  38929257 gacaaagactacactgtcaaatcacctcgtcaagaaacaggcaacaacccaaagctaaatcaaaaggaagatgataactaacaacaaaacacgggcagtg 38929158  T
Q  236 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 335  Q
    |||||||| ||||||| | ||||||| ||||||| ||||| |  | |    ||||| ||||| || |||||| |||||||||||||||||| ||||||||    
T  38929157 acgccggtctgaagcggaaacacaacctagatcgaaaacaggtttccaccggtgacaaggaggagacgtctggcgccggagtaaacaacaaccaagccaa 38929058  T
Q  336 aaagc 340  Q
    |||||    
T  38929057 aaagc 38929053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 31051204 - 31051295
Alignment:
Q  170 aaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 261  Q
    ||||||| ||||||   |||||||| | ||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||| | |||||||    
T  31051204 aaacaggtagcaacaccaacacaaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaac 31051295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 4304996 - 4304955
Alignment:
Q  318 aaacaacaatcaagccaaaaagctgctacaacccaccaacac 359  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  4304996 aaacaacaaccaagccaaaaagctgctacaacccaccaacac 4304955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 46699456 - 46699563
Alignment:
Q  143 actacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccgg 242  Q
    ||||| || ||||||| |||| |||||| ||||| | |||||  |||||| | ||| |||||||||||  |||||||||| ||||||||| ||||||||     
T  46699456 actacgccgccaaaccacctcaccaagacacaggcatcaacca-aacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccga 46699554  T
Q  243 tttgaagcg 251  Q
    |||||||||    
T  46699555 tttgaagcg 46699563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 28966450 - 28966403
Alignment:
Q  81 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 128  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  28966450 ggttcagcagacacaagagcaagacaacgaggttgaaagtctccaagg 28966403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 30963941 - 30963892
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 249  Q
    ||||||| |||| ||||| |||| ||||||||| ||||||||||||||||    
T  30963941 aggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaag 30963892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 7702856 - 7702824
Alignment:
Q  318 aaacaacaatcaagccaaaaagctgctacaacc 350  Q
    ||||||||| |||||||||||||||||||||||    
T  7702856 aaacaacaaccaagccaaaaagctgctacaacc 7702824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 136 - 338
Target Start/End: Complemental strand, 19598080 - 19597878
Alignment:
Q  136 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 235  Q
    ||||||| |||| |||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaacaggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacg 19597981  T
Q  236 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 335  Q
    |||||||| ||||| | | ||||||| |||||||||||||  ||| |||  || || ||||||||||||||   |||| |||||||||||| ||||||||    
T  19597980 acgccggtctgaagtggaaacacaacctagatcgtaaacagacatccgtcggtaacaaggagaaggcgtctcgtgccgaagtaaacaacaaccaagccaa 19597881  T
Q  336 aaa 338  Q
    |||    
T  19597880 aaa 19597878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 46693414 - 46693552
Alignment:
Q  136 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 235  Q
    ||||| ||| || |||||||||| ||||||||||||||||| | | |||| |||||| ||| ||||| |||||||| | |||||||  ||||||||| ||    
T  46693414 gacaaggacaacgcctccaaaccacctcgccaagaaacaggcatcgacctaaacacagacccaaagg-agatgaaaactaacaacagaacacgggcagcg 46693512  T
Q  236 acgccggtttgaagcgaagacacaacttagatcgtaaaca 275  Q
    |||||||| ||||||| | || |||| || ||||||||||    
T  46693513 acgccggtctgaagcggaaactcaacctaaatcgtaaaca 46693552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 339
Target Start/End: Original strand, 24450444 - 24450588
Alignment:
Q  194 accaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacga 293  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||   |||| || ||| ||||||||| ||||  |   ||||| |    
T  24450444 accaaaaggaagatgaaacccaacaacaaaacacgggcagcgacg-cagtttgaagcgggaacactacctaggtcgtaaacaggcatctgacggtgacaa 24450542  T
Q  294 ggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaag 339  Q
    ||||||||| |||  ||||  |||||||| ||| ||| ||||||||    
T  24450543 ggagaaggcatctagcgccacagtaaacaccaaccaatccaaaaag 24450588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 41919960 - 41919909
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    |||||||||||| || ||||||| |||||||||||||||| |||||||||||    
T  41919960 aggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcg 41919909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 31586287 - 31586335
Alignment:
Q  203 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    |||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  31586287 aagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcg 31586335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 24685106 - 24685142
Alignment:
Q  214 caacaacaagacacgggcaacgacgccggtttgaagc 250  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  24685106 caacaacaaaacacgggcagcgacgccggtttgaagc 24685142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 50589807 - 50589851
Alignment:
Q  84 tcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 128  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||    
T  50589807 tcagcaagcacaagagcaagacaacaaggttgatagtcttcaagg 50589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 340
Target Start/End: Complemental strand, 27712542 - 27712338
Alignment:
Q  136 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 235  Q
    ||||||||| || |||||||||| ||||||||||||||||  | |||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  27712542 gacaaagaccacgcctccaaaccacctcgccaagaaacagacaacaacccaaacacagaccaaaaggaagatgaaacccaacaacaaaacacgggcaacg 27712443  T
Q  236 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 335  Q
    |||||||| |||||   | ||||||  ||||||||||||| |||  |    ||||| ||||||||||||||| | |||||||||||||||| ||||||||    
T  27712442 acgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaaggcgtctggcaccggagtaaacaacaaccaagccaa 27712343  T
Q  336 aaagc 340  Q
    |||||    
T  27712342 aaagc 27712338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 340
Target Start/End: Original strand, 22687153 - 22687357
Alignment:
Q  136 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 235  Q
    |||||||||||| || ||||||| ||||||||||||||| |  | ||||  |||||| | |||||||||||||||||| |||||||| ||||| ||| ||    
T  22687153 gacaaagactacgccgccaaaccacctcgccaagaaacatgttgaaacccaaacacatatcaaaaggaagatgaaacctaacaacaaaacacgagcagcg 22687252  T
Q  236 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 335  Q
    || |  || ||||||| | ||||||| | ||||||||||| |||| ||  |||||| |||||||||||||  ||||||||||||||||||| |||| |||    
T  22687253 acacaagtctgaagcggaaacacaacctggatcgtaaacaggcatccgccagtgacaaggagaaggcgtccaacgccggagtaaacaacaaccaagtcaa 22687352  T
Q  336 aaagc 340  Q
    |||||    
T  22687353 aaagc 22687357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 697834 - 697623
Alignment:
Q  149 cctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaa 248  Q
    |||||||||| ||||| ||||||||| | |   |||| |||||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||| ||||    
T  697834 cctccaaaccacctcgtcaagaaacaagcattgacctaaacacataccaaaagga-gatgaaacctaacaacagcacacgggcagcgacgccggtctgaa 697736  T
Q  249 gcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctgctacaa 348  Q
    ||| | || |||| ||||||||||||| |||   |  |||||| |||||||||| || | | ||| |||||||||||| ||| | |||||||  | | |     
T  697735 gcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccgaagtaaacaacaaccaaacaaaaaagcgacaagag 697636  T
Q  349 cccaccaacacga 361  Q
    |||||||||||||    
T  697635 cccaccaacacga 697623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 27712659 - 27712614
Alignment:
Q  83 ttcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 128  Q
    ||||||| |||||||||||| |||| ||||||||||||||| ||||    
T  27712659 ttcagcaggcacaagagcaatacaacgaggttgaaagtctctaagg 27712614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 13099089 - 13099232
Alignment:
Q  81 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtag-gacaaagactacacctccaaaccccctcgccaagaaa-caggaa 178  Q
    ||||||||| ||||||||| ||| ||| ||||||||||||||| ||||  || || |||||||||||| || ||||||| || |||||||||| |||| |    
T  13099089 ggttcagcaggcacaagagaaagtcaacgaggttgaaagtctcaaaggaaagaagagacaaagactacgccaccaaaccaccacgccaagaaaacaggca 13099188  T
Q  179 gcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaa 222  Q
    ||||||  |||||||||||||||||| |||||||||||||||||    
T  13099189 gcaacccaaacacaaaccaaaaggaatatgaaacccaacaacaa 13099232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 12793615 - 12793554
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 261  Q
    ||||||| |||| ||| || ||| ||||||||||||||||| |||||||||||| |||||||    
T  12793615 aggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaac 12793554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 361
Target Start/End: Complemental strand, 37792806 - 37792648
Alignment:
Q  203 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggc 302  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||| | |||||||  | |||||||| | ||| |||   ||||| ||||| ||||    
T  37792806 aagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggagtaggc 37792707  T
Q  303 gtctgacgccggagtaaacaacaatcaagccaaaaagctgctacaacccaccaacacga 361  Q
    ||||||||| |||||| ||||||| ||||||||||||| || | | ||||| |||||||    
T  37792706 gtctgacgctggagtagacaacaaccaagccaaaaagcagcaagagcccacaaacacga 37792648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 326
Target Start/End: Complemental strand, 10243660 - 10243484
Alignment:
Q  149 cctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaa 248  Q
    |||| ||||| ||||||||||||||| | | | || | |||||| |||||||||| ||||||||| ||||| |  |||||||||  ||||| ||| ||||    
T  10243660 cctctaaaccacctcgccaagaaacaagcatcgacttaaacacagaccaaaagga-gatgaaacctaacaatagaacacgggcagtgacgctggtctgaa 10243562  T
Q  249 gcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaa 326  Q
    ||| | || |||| |||||||||| || |||  |||  |||||||| ||||||||||| || ||| | ||||||||||    
T  10243561 gcggaaactcaacctagatcgtaagcaggcacccgtcggtgacgagaagaaggcgtctaacaccgaattaaacaacaa 10243484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 38165702 - 38165750
Alignment:
Q  293 aggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagct 341  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||    
T  38165702 aggagaaggcgtctgacgccggagtaaacaacaacccaaccaaaaagct 38165750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 38485059 - 38484992
Alignment:
Q  194 accaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 261  Q
    ||||| ||||||| ||||||  ||||||| ||| ||||| |||||||||||||||||| | |||||||    
T  38485059 accaagaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaac 38484992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 1320204 - 1320127
Alignment:
Q  198 aaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaaca 275  Q
    ||||||||  ||||||||||||||| |||||| || ||||||||||  |||| |   ||||||| |||||||||||||    
T  1320204 aaaggaagccgaaacccaacaacaaaacacggacatcgacgccggtccgaagtgggaacacaacctagatcgtaaaca 1320127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 3420242 - 3420315
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 273  Q
    ||||||| |||||| |||||||| ||||| ||| ||||||||||| |||||| |  |||||| |||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaa 3420315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 340
Target Start/End: Complemental strand, 2062368 - 2062180
Alignment:
Q  152 ccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    ||||||| |||| ||||||||| |||||| ||   |||||| | ||| || |||||| ||||||||||||| ||||||||| |||||||||| |||||||    
T  2062368 ccaaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcg 2062269  T
Q  252 aagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagc 340  Q
     | |||||||  |||||||||||| | || |    | ||| ||||||||||||| ||| ||||| |||||||||| |||||||||||||    
T  2062268 gaaacacaacccagatcgtaaacaggtatccaccggagacaaggagaaggcgtccgacaccggaataaacaacaaccaagccaaaaagc 2062180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 31902967 - 31903040
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 273  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||||| |||||| ||||    
T  31902967 aggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaa 31903040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 340
Target Start/End: Complemental strand, 45163461 - 45163272
Alignment:
Q  150 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 249  Q
    ||||||||| ||||||||||||||||| || ||||  || ||| || |||||||||||||||||||||||||| |||| | |||||||||| || ||||     
T  45163461 ctccaaaccacctcgccaagaaacaggcagtaacccaaatacagactaaaaggaagatgaaacccaacaacaaaacacagacaacgacgccagtctgaat 45163362  T
Q  250 cgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagc 340  Q
     | | |||| || ||| ||||||||| |||| ||   ||||| | ||||||||||||| | ||  |||||||| ||| ||| |||||||||    
T  45163361 ggga-acactacctagttcgtaaacaggcatccgacggtgacaaagagaaggcgtctggcaccacagtaaacaccaaccaatccaaaaagc 45163272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 1653499 - 1653571
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaa 272  Q
    ||||||| |||| |||||||||| ||||||||| |||||||||||||||||||| | |||||  |||||||||    
T  1653499 aggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaa 1653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 2394726 - 2394825
Alignment:
Q  150 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 249  Q
    ||||||| | |||||||| |||||||| || ||||  || ||| ||||||||||||||||||||||| ||||| |||| | || |||||||||| |||||    
T  2394726 ctccaaagcacctcgccaggaaacaggcagtaacccaaatacagaccaaaaggaagatgaaacccaataacaaaacacagacagcgacgccggtctgaag 2394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 17501816 - 17501889
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 273  Q
    ||||||| |||| | |||||||| |||||| ||| |||| | |||||||||| | ||||||| |||||||||||    
T  17501816 aggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaa 17501889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 340
Target Start/End: Original strand, 37987465 - 37987654
Alignment:
Q  150 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 249  Q
    ||||||||| ||||||||||||||| | | | || | |||||| | ||| |||| ||||||||| |||||||  ||||||||| |||||||||| |||||    
T  37987465 ctccaaaccacctcgccaagaaacaagcatcgacttaaacacataacaagagga-gatgaaacctaacaacataacacgggcagcgacgccggtctgaag 37987563  T
Q  250 cgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagc 340  Q
    || | || |||| ||||||||||||| |||  ||   ||||| |||||||||| || | | ||| |||||||||||| ||| |||| ||||    
T  37987564 cggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccgaagtaaacaacaaccaaaccaacaagc 37987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 34866640 - 34866691
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcg 34866691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 9519116 - 9519068
Alignment:
Q  203 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    |||| ||||||||||||||| ||||||||| |||||| |||||||||||    
T  9519116 aagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcg 9519068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 10551806 - 10551755
Alignment:
Q  200 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 251  Q
    ||||||| |||||||||||||||  |||||||| |||||||| |||||||||    
T  10551806 aggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcg 10551755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 6105 - 5971
Alignment:
Q  81 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtag-gacaaagactacacctccaaaccccctcgccaagaaaca-ggaa 178  Q
    ||||||| | ||||||||||||| ||| |||||||||| |||||||||  || || |||||||||||| || | ||||| || | |||||||| | || |    
T  6105 ggttcaggaggcacaagagcaagtcaacgaggttgaaaatctccaaggaaagaagagacaaagactacgccacgaaaccaccacaccaagaaaaatggca 6006  T
Q  179 gcaacctgaacacaaaccaaaaggaagatgaaacc 213  Q
     |||||  |||||||||||||||||||||||||||    
T  6005 acaacccaaacacaaaccaaaaggaagatgaaacc 5971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University