View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7371_high_2 (Length: 243)
Name: NF7371_high_2
Description: NF7371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7371_high_2 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: scaffold0329 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 16884 - 17077
Alignment:
| Q |
37 |
gaagtccttgcaacaacgtcatatccttgtttgcttggctaagtggagagaaactaatggttttgatgaattggttgatggtgtgttaagcgtgtctaga |
136 |
Q |
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| T |
16884 |
gaagtccttgcaacaacgtcatatccttgtttgcttggctaagtggagagaaactaatggttttgatgaattggttgatggtgtgttaagcgtgtctgga |
16983 |
T |
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| Q |
137 |
caagttggtataggtaatggtggagaggattttgaggaagaagacaaaaagatgggtcctaacattaaacaatgccttcgtaaggttgttgatg |
230 |
Q |
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| T |
16984 |
caagttggtacaggtaatggtggagaggattttaaggaaaaagacaaaaagatgggtcctaacattaaacaatgccttcgtaagattgttgatg |
17077 |
T |
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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 19283782 - 19283589
Alignment:
| Q |
37 |
gaagtccttgcaacaacgtcatatccttgtttgcttggctaagtggagagaaactaatggttttgatgaattggttgatggtgtgttaagcgtgtctaga |
136 |
Q |
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| T |
19283782 |
gaagtccttgcaacaacgtcatatcctaggttgcttggctaagtggagagaaaccgatggttttgctgagttggttgagggtgtgttgagcgattctgga |
19283683 |
T |
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| Q |
137 |
caagttggtataggtaatggtggagaggattttgaggaagaagacaaaaagatgggtcctaacattaaacaatgccttcgtaaggttgttgatg |
230 |
Q |
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| T |
19283682 |
caagttggtaaaggtaatggaggagaggattttgaggaaaaagacaaaaagatgggtcctaatatcaaacaatgtcttcgtaaggttgttgatg |
19283589 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 10946675 - 10946867
Alignment:
| Q |
37 |
gaagtccttgcaacaacgtcatatccttgtttgcttggctaagtggagagaaactaatggttttgatgaattggttgatggtgtgttaagcgtgtctaga |
136 |
Q |
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| T |
10946675 |
gaagtccttgcaataacatcatattctgggttgcttgactaaatggagaaaagctgacggtttcgccaagttggtttatagtgtgttgggagggtctgga |
10946774 |
T |
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| Q |
137 |
caagttggtataggtaatggtggagaggattttgaggaagaagacaaaaagatgggtcctaacattaaacaatgccttcgtaaggttgttgat |
229 |
Q |
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| T |
10946775 |
catgatgatatgggtaatgaaggagattattttaaggagaaagacaaaaagatgggtactaacatcagacaatgctttcataaggttgttgat |
10946867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35150198 - 35150262
Alignment:
| Q |
165 |
attttgaggaagaagacaaaaagatgggtcctaacattaaacaatgccttcgtaaggttgttgatg |
230 |
Q |
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| T |
35150198 |
attttgagga-gaagacaaaaatgtgggtcctaacatcaaaaaatgcctttgtaaggttgtagatg |
35150262 |
T |
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