View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7371_high_3 (Length: 241)

Name: NF7371_high_3
Description: NF7371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7371_high_3
NF7371_high_3
[»] scaffold0386 (1 HSPs)
scaffold0386 (48-228)||(1027-1207)
[»] chr4 (2 HSPs)
chr4 (48-228)||(33878746-33878926)
chr4 (143-182)||(46673679-46673718)
[»] chr5 (2 HSPs)
chr5 (48-228)||(13869366-13869546)
chr5 (99-223)||(27641005-27641129)
[»] chr7 (2 HSPs)
chr7 (48-228)||(29735460-29735634)
chr7 (145-182)||(8720808-8720845)
[»] chr8 (2 HSPs)
chr8 (79-228)||(38460553-38460702)
chr8 (143-182)||(44428119-44428158)
[»] chr3 (1 HSPs)
chr3 (48-223)||(49851173-49851337)


Alignment Details
Target: scaffold0386 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 1027 - 1207
Alignment:
Q  48 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1027 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaa 1126  T
Q  148 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1127 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtt 1207  T

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Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 33878926 - 33878746
Alignment:
Q  48 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33878926 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctccgcatgatttggatccgttaattatggtgttgcaa 33878827  T
Q  148 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33878826 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtt 33878746  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 46673718 - 46673679
Alignment:
Q  143 tgcaatgagtagtcgatgagccataaccatcttcacaatt 182  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  46673718 tgcaatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

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Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 13869546 - 13869366
Alignment:
Q  48 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  13869546 aatttgacccattgctcgattggattgcaataacacccaatacagcatgatttagaaacaatctctacatgatttggatccgttaattatggtgttacaa 13869447  T
Q  148 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 228  Q
    |||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  13869446 tgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtt 13869366  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 27641129 - 27641005
Alignment:
Q  99 ttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaag 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  199 tttggagtttttagaattattccac 223  Q
    ||||| |||| ||||||||||||||    
T  27641029 tttggcgtttctagaattattccac 27641005  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 29735460 - 29735634
Alignment:
Q  48 aatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaa 147  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29735460 aatttaacccattgctcgattggattgcaataacacccaatacagtatggtttagaaacaatctctacatgatttggatccgttaattatggtgttgcaa 29735559  T
Q  148 tgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 228  Q
    |||      |||||| |||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||| ||||    
T  29735560 tga------gatgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtt 29735634  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  145 caatgagtagtcgatgagccataaccatcttcacaatt 182  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 38460702 - 38460553
Alignment:
Q  79 aacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcac 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  179 aatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 228  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtt 38460553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 44428119 - 44428158
Alignment:
Q  143 tgcaatgagtagtcgatgagccataaccatcttcacaatt 182  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  44428119 tgcaatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 49851173 - 49851337
Alignment:
Q  48 aatttgacccattgctcgattggattgcaataa---cacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttg 144  Q
    ||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||||| |||              ||||||||||||     
T  49851173 aatttgacccattgctcaattggattgcaataataacacccaatacagcatgatttagaaacaatctctacat--------------aattatggtgtta 49851258  T
Q  145 caatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccac 223  Q
    |||| || ||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  49851259 caataagcagtggatgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccac 49851337  T

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