View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7371_low_1 (Length: 337)
Name: NF7371_low_1
Description: NF7371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7371_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 81 - 323
Target Start/End: Original strand, 21009261 - 21009498
Alignment:
| Q |
81 |
acataaccaaaatcttgttaggt-aaaaacttgttaactaaaat-gattcaatcttgtcttcatcttatttggcttgtttatgttcgaagtgtttcaaag |
178 |
Q |
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| T |
21009261 |
acataaccaaaatcttattaggttaaaaacttgttaactaaaaaagattcaattttgtcttcatcttatttggcttgcttgtgttcggagtgtttccaag |
21009360 |
T |
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| Q |
179 |
aaaagaaaaaccatgtcttccgtgatttggaggcttcaattcatcatatatctttgataagttttataatttattttttgatctgcatgctaggtgggta |
278 |
Q |
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| T |
21009361 |
gaaagaaaacttctatctt--gtgattta-aggtttcgattcatcat----ctttgataagttttataatttattttttgatctgcatgctaggtgggta |
21009453 |
T |
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| Q |
279 |
aattacttagtgtatcttgagatgtctatttagtatttcttctat |
323 |
Q |
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| T |
21009454 |
aatcacttggtgtatcttgagatgtctatttagtatttcttctat |
21009498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 1854308 - 1854431
Alignment:
| Q |
104 |
aaaaacttgttaactaaaatgattcaatcttgtcttcatcttatttggcttgtttatgttcgaagtgtttcaaagaaaagaaaaaccatgtcttccgtga |
203 |
Q |
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| T |
1854308 |
aaaatcttgttaactaaaatgattcaatcttgccttcatcttatttgtcttgcttgtgttcgaagtttttcaaagaaaagaaaaatcgtgtcttccgtga |
1854407 |
T |
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| Q |
204 |
tttggaggcttcaattcatcatata |
228 |
Q |
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| T |
1854408 |
tttggaggcttcga-tcatcatata |
1854431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 1846721 - 1846783
Alignment:
| Q |
18 |
tcagaaacgttaaaagaagccatgaaagtttgaattcccaatgatcgactaatttcgcgggtg |
80 |
Q |
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| T |
1846721 |
tcagaaacgttaaaagaagccatgaaagtttgaattcccaatgatcgactaatttcgcgggtg |
1846783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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