View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7371_low_2 (Length: 331)
Name: NF7371_low_2
Description: NF7371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7371_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 95 - 313
Target Start/End: Original strand, 43212808 - 43213029
Alignment:
| Q |
95 |
gcagatagaatactttttt-ctcaaaccaaggaacttcggttaaaacttaaaaccatcaaatgtcatgcatgttacctccgtagattccaannnnnnnnc |
193 |
Q |
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| T |
43212808 |
gcagatagaatactttttttctcaaaccaaggaacttcggttaaaacttaaaaccatcaaatgtcatgcatgttacctccgtagattccaatttttcttc |
43212907 |
T |
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| Q |
194 |
cactagtacataaaaaga--tatcaaaggataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctcctt |
291 |
Q |
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| T |
43212908 |
cactagtacataaaaaaaaatatcaaaggataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctcctt |
43213007 |
T |
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| Q |
292 |
gagaatcttagcagcacctaga |
313 |
Q |
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| T |
43213008 |
gagaatcttagcagcacctaga |
43213029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 41650781 - 41650729
Alignment:
| Q |
257 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacc |
309 |
Q |
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| T |
41650781 |
aaaaaccatacttgtaactctttttcatgttccttgagaatcttagcagcacc |
41650729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 41655140 - 41655087
Alignment:
| Q |
256 |
taaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacc |
309 |
Q |
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| T |
41655140 |
taaaaaccatacctgtaactgtttttcatgttccttgaggatcttagcagcacc |
41655087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 43212706 - 43212748
Alignment:
| Q |
2 |
cataccgttttaatcttattttctgttttcattttctctacac |
44 |
Q |
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| T |
43212706 |
cataccgttttaatcttattttttgttttcattttctctacac |
43212748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 43223676 - 43223765
Alignment:
| Q |
95 |
gcagatagaatacttttttctcaaacca-aggaacttcggttaaaacttaaaaccatcaaatgtcatgcatgttacctccgtagattccaa |
184 |
Q |
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|||||||||||| |||| |||||||||| | ||| ||||| ||||||||||||| |||| |||||| |||||||||||| |||||||||| |
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| T |
43223676 |
gcagatagaata-ttttgtctcaaaccataaaaacctcggtcaaaacttaaaaccttcaagtgtcatacatgttacctccttagattccaa |
43223765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 43227370 - 43227422
Alignment:
| Q |
257 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacc |
309 |
Q |
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||||||||||| |||||||||||||| |||| |||||| ||||| |||||||| |
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| T |
43227370 |
aaaaaccatacttgtaactctttttcgtgctgcttgaggatctttgcagcacc |
43227422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 43206041 - 43206090
Alignment:
| Q |
260 |
aaccatacctgtaactctttttcatgctccttgagaatcttagcagcacc |
309 |
Q |
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|||||||| ||||| | ||||||| | ||||||||||||||||||||||| |
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| T |
43206041 |
aaccatacatgtaaatgtttttcacggtccttgagaatcttagcagcacc |
43206090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 5072673 - 5072716
Alignment:
| Q |
266 |
acctgtaactctttttcatgctccttgagaatcttagcagcacc |
309 |
Q |
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| T |
5072673 |
acctgtatctctttttcatgctgcttgagaatctttgcagcacc |
5072716 |
T |
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