View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7372_high_11 (Length: 278)
Name: NF7372_high_11
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 36606833 - 36606735
Alignment:
| Q |
88 |
aacgtccacccaaaatcttgtttaagctaccgagaaaccaatatttcctcttttccatcactattttgttcctcttctcctgcccaatttttccatcag |
186 |
Q |
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| T |
36606833 |
aacgtctacccaaaatcttgtttaagctaccgagaaaccaatatttcctcttttccatcactattttgttcctcttctcctgcccaatttttccatcag |
36606735 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 16343220 - 16343185
Alignment:
| Q |
122 |
aaaccaatatttcctcttttccatcactattttgtt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
16343220 |
aaaccaatatttcctcttttccatcactattttgtt |
16343185 |
T |
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