View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7372_high_4 (Length: 355)
Name: NF7372_high_4
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 38556184 - 38556513
Alignment:
| Q |
10 |
aagaatatgatccatataatggttatgattttcaatcatataaactaaattaattctcaccatagtggatgttatccatctnnnnnnnntgttaaccttc |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
38556184 |
aagaatatgatccatataatggatatgattatcaaccatttaaactaaattaattctcaccatagtggatgttatccatctaaaaaaaatgttcaccttc |
38556283 |
T |
|
| Q |
110 |
aagtaaattcatatcatattatgtgcgagaagctgatttat--acaatgacccaggtgatatgcttgtttacgaaccatctatttctagaatcgacaccg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38556284 |
aagtaaattcatatcatattatgtgcgagaagctgatttattaacaatgacccaggtgatttgcttgtttatgaaccatctatttctagaatcgacacca |
38556383 |
T |
|
| Q |
208 |
ccaaattagtcaactattggttaacttttgtttcgaggtcaaatctgtaggtaattacgagtttgtcttggatttggaaacttaagatgacattctttca |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38556384 |
ccaaattagtcaactattggttagcttttgtttcgaggtcaaatctgtaggtaattacgagtttgtcttggatttggaaacttaagatgacattctttga |
38556483 |
T |
|
| Q |
308 |
caatgatgaataattttttatggtttaacat |
338 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
38556484 |
caatgat-aataattttttatggtttaacat |
38556513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University