View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7372_high_5 (Length: 318)
Name: NF7372_high_5
Description: NF7372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7372_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 43818351 - 43818643
Alignment:
| Q |
19 |
gagagttgttactaatataatctccatctgaaaggggaaaacaactaaggnnnnnnn-ggataaaggaaaatgatctgcatttttctctagtactgtcct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
43818351 |
gagagttgttactaatataatctccatctgaaaggggaaaacaactaagaaaaaaaaaggataaaggaaaatgatctgcatttttctctgttactcccct |
43818450 |
T |
|
| Q |
118 |
tggtggaatttcatttacatccagaaattacatagggatactcatggagggaagagatgaagaaaagttagctcaaactcctttgaagataaggaaattg |
217 |
Q |
| |
|
||||||||||||||| | ||||| || |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
43818451 |
tggtggaatttcattcgccaccagacatgacatgaggatactcatggagggaagatatgaagaaaaagtagctcaaactcctttgaaaataaggaaattg |
43818550 |
T |
|
| Q |
218 |
agagtctcaagagtgaagtatatgaatgttcccttagaatgagtgaaaaaacacccaaaacttgaacctaccacacattgccatccaccacca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43818551 |
agagtctcaagagtgaagtatatgaatgttcccttagaatgagtgaaaaaacagccaaaacttgaacctaccacacattgccatccaccacca |
43818643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University